Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00575, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 54 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF00575 |
---|---|
Description | S1 RNA binding domain |
Occurence in the database
PF00575 is associated with 54 different proteins (see tab "Protein list" and "Profile") |
The 54 proteins are classified into 8 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_748 | FBDBKF_03330 | 67493 | 68962 | -1 | rng | ribonuclease G | Morganella morganii S1 |
1 | group_932 | FBDBKF_05060 | 17737 | 19674 | 1 | rnb | exoribonuclease II | Morganella morganii S1 |
2 | group_1229 | FBDBKF_07160 | 104223 | 105896 | 1 | rpsA | 30S ribosomal protein S1 | Morganella morganii S1 |
3 | group_1371 | FBDBKF_08485 | 77735 | 80173 | 1 | rnr | ribonuclease R | Morganella morganii S1 |
4 | group_1403 | FBDBKF_08665 | 112896 | 114407 | 1 | nusA | Transcription antitermination factor NusA, contains S1 and KH domains | Morganella morganii S1 |
5 | group_1408 | FBDBKF_08695 | 119206 | 121362 | 1 | pnp | polyribonucleotide nucleotidyltransferase | Morganella morganii S1 |
6 | group_1629 | FBDBKF_10730 | 113040 | 115370 | -1 | tex | Transcriptional accessory protein Tex/SPT6 | Morganella morganii S1 |
7 | group_1968 | FBDBKF_14760 | 47868 | 51032 | 1 | rne | ribonuclease E | Morganella morganii S1 |
8 | group_1229 | EHELCC_03810 | 80290 | 81963 | -1 | rpsA | 30S ribosomal protein S1 | Morganella morganii S2 |
9 | group_748 | EHELCC_07205 | 178141 | 179610 | 1 | rng | ribonuclease G | Morganella morganii S2 |
10 | group_932 | EHELCC_12530 | 161820 | 163757 | -1 | rnb | exoribonuclease II | Morganella morganii S2 |
11 | group_1408 | EHELCC_12830 | 42363 | 44519 | -1 | pnp | polyribonucleotide nucleotidyltransferase | Morganella morganii S2 |
12 | group_1403 | EHELCC_12860 | 49318 | 50829 | -1 | nusA | Transcription antitermination factor NusA, contains S1 and KH domains | Morganella morganii S2 |
13 | group_1371 | EHELCC_13040 | 83552 | 85990 | -1 | rnr | ribonuclease R | Morganella morganii S2 |
14 | group_1629 | EHELCC_15065 | 113030 | 115360 | -1 | tex | Transcriptional accessory protein Tex/SPT6 | Morganella morganii S2 |
15 | group_1968 | EHELCC_15565 | 77944 | 81108 | 1 | rne | ribonuclease E | Morganella morganii S2 |
16 | group_1229 | NLDBIP_03810 | 80086 | 81759 | -1 | rpsA | 30S ribosomal protein S1 | Morganella morganii S4 |
17 | group_748 | NLDBIP_07530 | 178014 | 179483 | 1 | rng | ribonuclease G | Morganella morganii S4 |
18 | group_932 | NLDBIP_12870 | 161775 | 163712 | -1 | rnb | exoribonuclease II | Morganella morganii S4 |
19 | group_1408 | NLDBIP_13170 | 42363 | 44519 | -1 | pnp | polyribonucleotide nucleotidyltransferase | Morganella morganii S4 |
20 | group_1403 | NLDBIP_13200 | 49318 | 50829 | -1 | nusA | Transcription antitermination factor NusA, contains S1 and KH domains | Morganella morganii S4 |
21 | group_1371 | NLDBIP_13380 | 83552 | 85990 | -1 | rnr | ribonuclease R | Morganella morganii S4 |
22 | group_1629 | NLDBIP_14895 | 113030 | 115360 | -1 | tex | Transcriptional accessory protein Tex/SPT6 | Morganella morganii S4 |
23 | group_1968 | NLDBIP_16095 | 77944 | 81108 | 1 | rne | ribonuclease E | Morganella morganii S4 |
24 | group_748 | LHKJJB_07065 | 141760 | 143229 | 1 | rng | ribonuclease G | Morganella morganii S3 |
25 | group_1229 | LHKJJB_09640 | 80200 | 81873 | -1 | rpsA | 30S ribosomal protein S1 | Morganella morganii S3 |
26 | group_932 | LHKJJB_12730 | 161820 | 163757 | -1 | rnb | exoribonuclease II | Morganella morganii S3 |
27 | group_1371 | LHKJJB_13175 | 76453 | 78891 | 1 | rnr | ribonuclease R | Morganella morganii S3 |
28 | group_1403 | LHKJJB_13355 | 111614 | 113125 | 1 | nusA | Transcription antitermination factor NusA, contains S1 and KH domains | Morganella morganii S3 |
29 | group_1408 | LHKJJB_13385 | 117924 | 120080 | 1 | pnp | polyribonucleotide nucleotidyltransferase | Morganella morganii S3 |
30 | group_1629 | LHKJJB_14450 | 26366 | 28696 | 1 | tex | Transcriptional accessory protein Tex/SPT6 | Morganella morganii S3 |
31 | group_1968 | LHKJJB_15745 | 35578 | 38742 | -1 | rne | ribonuclease E | Morganella morganii S3 |
32 | group_748 | HKOGLL_03865 | 90158 | 91627 | -1 | rng | ribonuclease G | Morganella morganii S5 |
33 | group_1229 | HKOGLL_09335 | 109179 | 110852 | 1 | rpsA | 30S ribosomal protein S1 | Morganella morganii S5 |
34 | group_932 | HKOGLL_11345 | 161820 | 163757 | -1 | rnb | exoribonuclease II | Morganella morganii S5 |
35 | group_1408 | HKOGLL_11645 | 42363 | 44519 | -1 | pnp | polyribonucleotide nucleotidyltransferase | Morganella morganii S5 |
36 | group_1403 | HKOGLL_11675 | 49318 | 50829 | -1 | nusA | Transcription antitermination factor NusA, contains S1 and KH domains | Morganella morganii S5 |
37 | group_1371 | HKOGLL_11855 | 83552 | 85990 | -1 | rnr | ribonuclease R | Morganella morganii S5 |
38 | group_1629 | HKOGLL_13070 | 26366 | 28696 | 1 | tex | Transcriptional accessory protein Tex/SPT6 | Morganella morganii S5 |
39 | group_1968 | HKOGLL_14865 | 34790 | 37954 | -1 | rne | ribonuclease E | Morganella morganii S5 |
40 | group_1229 | F4V73_RS01345 | 292246 | 293919 | 1 | rpsA | 30S ribosomal protein S1 | Morganella psychrotolerans |
41 | group_932 | F4V73_RS05500 | 1169120 | 1171057 | 1 | exoribonuclease II | Morganella psychrotolerans | |
42 | group_1968 | F4V73_RS07555 | 1576676 | 1579888 | 1 | rne | ribonuclease E | Morganella psychrotolerans |
43 | group_1371 | F4V73_RS09705 | 43924 | 46365 | 1 | rnr | ribonuclease R | Morganella psychrotolerans |
44 | group_1408 | F4V73_RS09915 | 86389 | 88545 | 1 | pnp | polyribonucleotide nucleotidyltransferase | Morganella psychrotolerans |
45 | group_748 | F4V73_RS11605 | 470799 | 472268 | 1 | rng | ribonuclease G | Morganella psychrotolerans |
46 | group_1629 | F4V73_RS14445 | 116749 | 119079 | -1 | Tex family protein | Morganella psychrotolerans | |
47 | group_1229 | PMI_RS03515 | 783718 | 785391 | 1 | rpsA | 30S ribosomal protein S1 | Proteus mirabilis HI4320 |
48 | group_1968 | PMI_RS04180 | 941186 | 944707 | -1 | rne | ribonuclease E | Proteus mirabilis HI4320 |
49 | group_932 | PMI_RS06325 | 1385905 | 1387848 | 1 | exoribonuclease II | Proteus mirabilis HI4320 | |
50 | group_1629 | PMI_RS14280 | 3168856 | 3171189 | -1 | Tex family protein | Proteus mirabilis HI4320 | |
51 | group_1371 | PMI_RS16780 | 3699300 | 3701789 | 1 | rnr | ribonuclease R | Proteus mirabilis HI4320 |
52 | group_1403 | PMI_RS17020 | 3743179 | 3744687 | 1 | nusA | transcription termination factor NusA | Proteus mirabilis HI4320 |
53 | group_1408 | PMI_RS17045 | 3749787 | 3751916 | 1 | pnp | polyribonucleotide nucleotidyltransferase | Proteus mirabilis HI4320 |