PF00575

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00575
Protein list: lists the 54 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00575
Description S1 RNA binding domain

Occurence in the database

PF00575 is associated with 54 different proteins
The 54 proteins are classified into 8 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_819 FBDBKF_03330 67493 68962 -1 rng ribonuclease G Morganella morganii S1
1 group_999 FBDBKF_05060 17737 19674 1 rnb exoribonuclease II Morganella morganii S1
2 group_1288 FBDBKF_07160 104223 105896 1 rpsA 30S ribosomal protein S1 Morganella morganii S1
3 group_1427 FBDBKF_08485 77735 80173 1 rnr ribonuclease R Morganella morganii S1
4 group_1459 FBDBKF_08665 112896 114407 1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S1
5 group_1464 FBDBKF_08695 119206 121362 1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S1
6 group_1671 FBDBKF_10730 113040 115370 -1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S1
7 group_2005 FBDBKF_14760 47868 51032 1 rne ribonuclease E Morganella morganii S1
8 group_1288 EHELCC_03810 80290 81963 -1 rpsA 30S ribosomal protein S1 Morganella morganii S2
9 group_819 EHELCC_07205 178141 179610 1 rng ribonuclease G Morganella morganii S2
10 group_999 EHELCC_12530 161820 163757 -1 rnb exoribonuclease II Morganella morganii S2
11 group_1464 EHELCC_12830 42363 44519 -1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S2
12 group_1459 EHELCC_12860 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S2
13 group_1427 EHELCC_13040 83552 85990 -1 rnr ribonuclease R Morganella morganii S2
14 group_1671 EHELCC_15065 113030 115360 -1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S2
15 group_2005 EHELCC_15565 77944 81108 1 rne ribonuclease E Morganella morganii S2
16 group_1288 NLDBIP_03810 80086 81759 -1 rpsA 30S ribosomal protein S1 Morganella morganii S4
17 group_819 NLDBIP_07530 178014 179483 1 rng ribonuclease G Morganella morganii S4
18 group_999 NLDBIP_12870 161775 163712 -1 rnb exoribonuclease II Morganella morganii S4
19 group_1464 NLDBIP_13170 42363 44519 -1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S4
20 group_1459 NLDBIP_13200 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S4
21 group_1427 NLDBIP_13380 83552 85990 -1 rnr ribonuclease R Morganella morganii S4
22 group_1671 NLDBIP_14895 113030 115360 -1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S4
23 group_2005 NLDBIP_16095 77944 81108 1 rne ribonuclease E Morganella morganii S4
24 group_819 LHKJJB_07065 141760 143229 1 rng ribonuclease G Morganella morganii S3
25 group_1288 LHKJJB_09640 80200 81873 -1 rpsA 30S ribosomal protein S1 Morganella morganii S3
26 group_999 LHKJJB_12730 161820 163757 -1 rnb exoribonuclease II Morganella morganii S3
27 group_1427 LHKJJB_13175 76453 78891 1 rnr ribonuclease R Morganella morganii S3
28 group_1459 LHKJJB_13355 111614 113125 1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S3
29 group_1464 LHKJJB_13385 117924 120080 1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S3
30 group_1671 LHKJJB_14450 26366 28696 1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S3
31 group_2005 LHKJJB_15745 35578 38742 -1 rne ribonuclease E Morganella morganii S3
32 group_819 HKOGLL_03865 90158 91627 -1 rng ribonuclease G Morganella morganii S5
33 group_1288 HKOGLL_09335 109179 110852 1 rpsA 30S ribosomal protein S1 Morganella morganii S5
34 group_999 HKOGLL_11345 161820 163757 -1 rnb exoribonuclease II Morganella morganii S5
35 group_1464 HKOGLL_11645 42363 44519 -1 pnp polyribonucleotide nucleotidyltransferase Morganella morganii S5
36 group_1459 HKOGLL_11675 49318 50829 -1 nusA Transcription antitermination factor NusA, contains S1 and KH domains Morganella morganii S5
37 group_1427 HKOGLL_11855 83552 85990 -1 rnr ribonuclease R Morganella morganii S5
38 group_1671 HKOGLL_13070 26366 28696 1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S5
39 group_2005 HKOGLL_14865 34790 37954 -1 rne ribonuclease E Morganella morganii S5
40 group_1288 F4V73_RS01345 292246 293919 1 rpsA 30S ribosomal protein S1 Morganella psychrotolerans
41 group_999 F4V73_RS05500 1169120 1171057 1 exoribonuclease II Morganella psychrotolerans
42 group_2005 F4V73_RS07555 1576676 1579888 1 rne ribonuclease E Morganella psychrotolerans
43 group_1427 F4V73_RS09705 43924 46365 1 rnr ribonuclease R Morganella psychrotolerans
44 group_1464 F4V73_RS09915 86389 88545 1 pnp polyribonucleotide nucleotidyltransferase Morganella psychrotolerans
45 group_819 F4V73_RS11605 470799 472268 1 rng ribonuclease G Morganella psychrotolerans
46 group_1671 F4V73_RS14445 116749 119079 -1 Tex family protein Morganella psychrotolerans
47 group_1288 PMI_RS03515 783718 785391 1 rpsA 30S ribosomal protein S1 Proteus mirabilis HI4320
48 group_2005 PMI_RS04180 941186 944707 -1 rne ribonuclease E Proteus mirabilis HI4320
49 group_999 PMI_RS06325 1385905 1387848 1 exoribonuclease II Proteus mirabilis HI4320
50 group_1671 PMI_RS14280 3168856 3171189 -1 Tex family protein Proteus mirabilis HI4320
51 group_1427 PMI_RS16780 3699300 3701789 1 rnr ribonuclease R Proteus mirabilis HI4320
52 group_1459 PMI_RS17020 3743179 3744687 1 nusA transcription termination factor NusA Proteus mirabilis HI4320
53 group_1464 PMI_RS17045 3749787 3751916 1 pnp polyribonucleotide nucleotidyltransferase Proteus mirabilis HI4320