Orthogroup:group_1288


Homologs in group_1288

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07825 FBDBKF_07825 Morganella morganii S1 rarD EamA family transporter RarD
EHELCC_13655 EHELCC_13655 Morganella morganii S2 rarD EamA family transporter RarD
NLDBIP_14100 NLDBIP_14100 Morganella morganii S4 rarD EamA family transporter RarD
LHKJJB_08750 LHKJJB_08750 Morganella morganii S3 rarD EamA family transporter RarD
HKOGLL_08300 HKOGLL_08300 Morganella morganii S5 rarD EamA family transporter RarD
F4V73_RS13220 F4V73_RS13220 Morganella psychrotolerans rarD EamA family transporter RarD
PMI_RS10780 PMI_RS10780 Proteus mirabilis HI4320 rarD EamA family transporter RarD

Distribution of group_1288 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1288 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1288

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1288.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rarD 7

Product

# Product Occurence
1 EamA family transporter RarD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2962 7 R General function prediction only (R) Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05786 7 chloramphenicol-sensitive protein RarD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00892 7 EamA-like transporter family

Annotations of the 11 SwissProt hits

Annotation Number of occurrences
Chloramphenicol-sensitive protein RarD 1
Protein RarD 4
Uncharacterized transporter HI_0223 1
Uncharacterized transporter HI_0680 1
Uncharacterized transporter PA0485 1
Uncharacterized transporter PM1281 1
Uncharacterized transporter VC_0195 1
Uncharacterized transporter YojE 1

Protein length

Min length 302
Max length 303
Mean length (sd) 302.1 (0.4)
Median length 302.0

Protein length distribution