Homologs in group_1968

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14760 FBDBKF_14760 84.1 Morganella morganii S1 rne ribonuclease E
EHELCC_15565 EHELCC_15565 84.1 Morganella morganii S2 rne ribonuclease E
NLDBIP_16095 NLDBIP_16095 84.1 Morganella morganii S4 rne ribonuclease E
LHKJJB_15745 LHKJJB_15745 84.1 Morganella morganii S3 rne ribonuclease E
HKOGLL_14865 HKOGLL_14865 84.1 Morganella morganii S5 rne ribonuclease E
PMI_RS04180 PMI_RS04180 66.1 Proteus mirabilis HI4320 rne ribonuclease E

Distribution of the homologs in the orthogroup group_1968

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1968

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21513 0.0 1044 59 21 1105 1 rne Ribonuclease E Escherichia coli (strain K12)
P44443 0.0 858 77 4 551 3 rne Ribonuclease E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9J9 0.0 852 77 0 502 3 rne Ribonuclease E Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57429 0.0 801 65 1 603 3 rne Ribonuclease E Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AH3 8.3e-180 533 61 0 402 3 rne Putative ribonuclease E Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
A0R152 7.94e-70 256 38 9 389 1 rne Ribonuclease E Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q8YP69 2.47e-69 249 38 6 386 1 rne Ribonuclease E Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P71905 1.37e-68 252 37 8 393 1 rne Ribonuclease E Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P72656 1.2e-66 241 36 5 379 1 rne Ribonuclease E Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A0A0H3NGK0 5.19e-65 231 35 8 436 1 rng Ribonuclease G Salmonella typhimurium (strain SL1344)
P45175 6.7e-65 231 35 5 459 3 rng Ribonuclease G Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A9J3 3.11e-64 229 35 8 436 3 rng Ribonuclease G Shigella flexneri
P0A9J0 3.11e-64 229 35 8 436 1 rng Ribonuclease G Escherichia coli (strain K12)
P0A9J1 3.11e-64 229 35 8 436 3 rng Ribonuclease G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9J2 3.11e-64 229 35 8 436 3 rng Ribonuclease G Escherichia coli O157:H7
P51211 4.06e-48 183 32 6 367 3 rne Ribonuclease E/G-like protein Porphyra purpurea
F4IV66 5.04e-48 189 35 7 334 1 RNE Ribonuclease E/G-like protein, chloroplastic Arabidopsis thaliana
Q1XDS6 8.69e-48 182 31 5 366 3 rne Ribonuclease E/G-like protein Neopyropia yezoensis
O78453 2.05e-17 89 27 16 374 3 rne Ribonuclease E/G-like protein Guillardia theta
Q9TL10 1.58e-05 52 34 2 112 3 rne Ribonuclease E/G-like protein Nephroselmis olivacea

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07555
Feature type CDS
Gene rne
Product ribonuclease E
Location 1576676 - 1579888 (strand: 1)
Length 3213 (nucleotides) / 1070 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1968
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF10150 Ribonuclease E/G family
PF20833 RNase E/G, Thioredoxin-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1530 Translation, ribosomal structure and biogenesis (J) J Ribonuclease G or E

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08300 ribonuclease E [EC:3.1.26.12] RNA degradation -

Protein Sequence

MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIKEIAREYFPANYHASGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALDIPEGMGLIVRTAGVGKSADSLRWDLEYRVKHWEAIKAVSESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELARKHITAIGRADFVSKIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGAIVIDTTEALTAIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRNQREVENRMREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLALSILRLIEEEALKENTHQVHAIVPVPVASYLLNEKRQAVSAIETRQAGVSVIIVPNNHMETPHFSVVRVRNGEEIGTLSYRLPEKYEAEAAAVEEEETPERREPEQPAINAFEITSDAPVPTQSAPSRKQEVKRDNRQEDKAAASSEGGFFSRFFKKLFGSEPVAAVEAPAQKETTQGNDNNRRGGNDRNKQRRNRRDRNGDRPERGERTERAGSPERTERPDRPERAAGESRNKRDRDTVNEPRKPRNQNTPEEELTPEALAAREAQQQLRRDQRAERQRRRQDEKRTQPQDEKVLLAQQEDQDALNSDGNTEDDDAPTQVRTRRTRRQLTGSVRVTDSVTSVAPVAPAVVAVTPAVPAVIDAAPAPVVAPIVAQTAETEASVSADAAGDEAHTDNMLPRRSRRSPRHLRVSGQRRRRYREDRQLTQSPVPLEMAVFSPELASGKVWIQYPVVTPAAEFVPVEDIQVDTTDAVNTTAPVAETATIAPVVTEIVANVAETTVVAEQFTLTVASEAPQPAVAEPVITEPVVTESVAVEPVIADVAQVVVAIVKDTVSDVTEHTAAAETHVAQAIAAAPQVTETAAVVVAVAVQAGHHASSGMTKAPAPAAAGEAFTIVEYQREAREDYQAHGAGAHAATNHASSGATKTML

Flanking regions ( +/- flanking 50bp)

CAAGATTGCCCGCAGCGCACTAACTAAATGAAAAAATTGAGTAACTTATAATGAAAAGAATGTTAATCAACGCAACTCAGCAGGAAGAGTTGCGTGTTGCCCTCGTCGACGGGCAACGGCTGTATGATCTGGATATTGAAAGTCCCGGTCACGAACAAAAAAAAGCAAACATCTATAAAGGGAAAATAACCCGTATTGAACCGAGTTTAGAAGCTGCTTTTGTTGACTATGGCGCAGAGCGTCACGGTTTTCTTCCTATCAAAGAAATTGCCCGCGAGTATTTTCCCGCTAATTATCACGCATCCGGTCGCCCTAATATCAAAGATGTCCTGAGAGAAGGTCAGGAAGTCATTGTTCAGGTCGATAAAGAAGAGCGCGGTAATAAAGGTGCAGCACTCACCACGTTTATCAGCCTCGCCGGGAGCTATCTGGTTTTAATGCCGAATAACCCGCGTGCCGGGGGGATTTCCCGCCGTATCGAAGGTGATGATCGTACTGAGCTGAAAGAAGCGCTTTCCGCGCTGGATATTCCGGAAGGTATGGGGCTTATCGTCCGTACTGCCGGTGTGGGTAAATCCGCTGACTCCCTGAGATGGGATCTGGAATACCGCGTCAAGCACTGGGAGGCTATCAAAGCAGTATCCGAAAGCCGTCCGGCACCTTTCCTTATCCATCAGGAAAGTAATGTTATCGTCCGCGCGTTCCGTGATTATCTGCGCCCGGACATCGGTGAAATCCTCATCGATAATCCTAAGGTTCTGGAACTGGCGCGCAAACACATCACCGCTATCGGTCGTGCTGATTTCGTCAGTAAAATTAAGTTGTACCAGGGCGAAGTGCCGCTGTTCAGCCATTACCAGATTGAATCTCAGATTGAATCCGCTTTCCAGCGTGAAGTCCGCCTGCCGTCAGGCGGTGCTATTGTTATCGATACCACCGAAGCCCTGACCGCCATTGATATTAACTCCTCCCGCTCAACGCGCGGCGGTGATATCGAAGAAACCGCCTTTAACACCAACCTCGAAGCGGCGGATGAAATTGCCCGTCAGCTGCGTCTGCGTGACCTCGGCGGTCTGATTGTCATCGACTTTATCGATATGACCCCTGTGCGCAATCAGCGTGAAGTTGAAAACCGGATGCGCGAAGCCGTTCGTCAGGATCGCGCCCGTATTCAGATCGGCCGTATTTCCCGTTTCGGTTTACTGGAAATGTCCCGTCAGCGTCTCAGCCCGTCACTGGGTGAGTCAAGCCATCATGTGTGTCCGCGATGCAGCGGAACCGGAACAGTGCGCGACAATGAATCACTGGCGCTCTCTATTCTGCGTCTGATTGAAGAAGAAGCACTGAAAGAGAATACCCATCAGGTTCATGCCATCGTACCGGTGCCGGTTGCCTCTTATCTGCTGAATGAAAAACGTCAGGCAGTCAGTGCGATTGAAACCCGTCAGGCCGGTGTCAGTGTCATTATTGTACCGAACAACCACATGGAAACGCCGCACTTCAGTGTCGTCCGCGTCCGTAATGGTGAAGAAATCGGTACACTGAGCTATCGCTTACCGGAGAAATACGAAGCCGAAGCCGCAGCCGTTGAGGAAGAAGAGACACCTGAGCGCCGTGAGCCGGAACAACCGGCAATCAATGCATTTGAAATTACCTCTGATGCACCCGTGCCGACACAGTCCGCCCCTTCCCGTAAACAGGAAGTTAAGCGCGATAATCGTCAGGAAGATAAAGCTGCTGCATCTTCCGAAGGCGGGTTCTTCAGCCGTTTCTTCAAAAAACTGTTCGGGTCTGAACCGGTTGCAGCCGTAGAAGCCCCTGCACAGAAAGAGACAACACAAGGTAACGATAATAACCGCCGTGGTGGTAACGATCGTAACAAACAGCGTCGTAACCGCCGTGATCGTAATGGTGACCGCCCTGAACGCGGGGAGCGCACTGAACGTGCGGGTAGTCCTGAGCGTACAGAGCGCCCTGACCGTCCGGAACGCGCCGCAGGTGAATCCCGTAACAAGCGTGATCGCGATACGGTAAATGAACCACGCAAACCGCGCAACCAGAACACGCCGGAAGAAGAACTGACACCGGAAGCACTGGCCGCCCGCGAAGCACAGCAGCAGTTACGCCGTGATCAGCGTGCAGAGCGTCAGCGCCGCCGTCAGGATGAGAAACGCACCCAGCCGCAGGATGAGAAAGTACTTCTCGCCCAGCAGGAAGATCAGGATGCACTCAACAGTGACGGCAATACCGAAGATGATGATGCACCGACTCAGGTTCGTACGCGTCGTACACGCCGTCAGTTAACCGGCTCTGTCCGTGTCACTGATAGTGTGACATCCGTTGCACCTGTCGCACCTGCTGTTGTTGCTGTAACGCCGGCAGTTCCGGCTGTTATTGATGCCGCACCTGCACCTGTTGTTGCACCGATTGTTGCACAGACGGCTGAAACTGAAGCCTCTGTCTCTGCGGATGCTGCCGGTGATGAAGCACACACTGATAATATGCTGCCGCGCCGCTCCCGCCGCTCTCCGCGCCATCTGCGTGTGAGTGGTCAGCGCCGCCGCCGTTACCGCGAAGACCGTCAGCTGACTCAGTCGCCGGTTCCGCTGGAAATGGCGGTGTTCTCCCCTGAGCTTGCATCCGGTAAAGTGTGGATCCAATATCCGGTGGTAACACCTGCTGCAGAATTTGTTCCTGTCGAAGATATCCAGGTCGATACCACAGATGCGGTTAATACCACTGCACCTGTTGCCGAAACCGCAACTATCGCCCCGGTTGTGACTGAGATTGTCGCGAATGTGGCAGAAACAACGGTTGTGGCAGAGCAGTTCACACTGACGGTTGCCTCAGAAGCACCACAGCCTGCTGTTGCTGAGCCTGTTATCACTGAGCCGGTGGTTACTGAGTCTGTCGCTGTTGAACCGGTGATTGCTGATGTGGCGCAAGTCGTGGTGGCGATTGTGAAAGACACCGTTTCTGACGTGACTGAACACACTGCCGCCGCAGAAACACATGTTGCTCAGGCAATTGCTGCTGCACCTCAGGTAACTGAAACAGCCGCTGTCGTGGTTGCCGTTGCGGTGCAGGCTGGTCATCATGCTTCTTCCGGGATGACAAAAGCACCGGCTCCGGCTGCTGCCGGTGAAGCATTTACAATTGTGGAATATCAGCGTGAAGCGCGTGAAGATTATCAGGCGCATGGCGCCGGTGCTCATGCCGCGACAAATCACGCCTCTTCCGGCGCGACAAAAACAATGCTTTGATTTATTAATCAGACCGTTAAATGGCTCCCCCGGGAGCCATTTTTTTATCC