Homologs in group_1371

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08485 FBDBKF_08485 92.6 Morganella morganii S1 rnr ribonuclease R
EHELCC_13040 EHELCC_13040 92.6 Morganella morganii S2 rnr ribonuclease R
NLDBIP_13380 NLDBIP_13380 92.6 Morganella morganii S4 rnr ribonuclease R
LHKJJB_13175 LHKJJB_13175 92.6 Morganella morganii S3 rnr ribonuclease R
HKOGLL_11855 HKOGLL_11855 92.6 Morganella morganii S5 rnr ribonuclease R
PMI_RS16780 PMI_RS16780 76.0 Proteus mirabilis HI4320 rnr ribonuclease R

Distribution of the homologs in the orthogroup group_1371

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1371

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21499 0.0 1211 74 3 775 1 rnr Ribonuclease R Escherichia coli (strain K12)
P30851 0.0 1210 75 2 771 3 rnr Ribonuclease R Shigella flexneri
Q9KNY1 0.0 1021 63 3 762 3 rnr Ribonuclease R Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P44907 0.0 1019 65 2 742 3 rnr Ribonuclease R Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P40611 0.0 1002 64 2 739 3 rnr Ribonuclease R Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8K917 0.0 792 51 4 727 3 rnr Ribonuclease R Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57628 0.0 766 49 2 728 3 rnr Ribonuclease R Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O32231 1.97e-178 535 39 7 727 1 rnr Ribonuclease R Bacillus subtilis (strain 168)
O67834 7.69e-149 456 40 4 646 3 rnr Ribonuclease R Aquifex aeolicus (strain VF5)
P54084 2.07e-138 419 50 3 428 3 rnr Ribonuclease R (Fragment) Acidithiobacillus ferrooxidans
Q9WZI1 2.36e-130 408 35 8 701 3 rnr Ribonuclease R Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9CH00 2.35e-128 406 35 18 735 3 rnr1 Ribonuclease R 1 Lactococcus lactis subsp. lactis (strain IL1403)
Q02146 1.01e-88 297 32 12 659 3 rnr2 Ribonuclease R 2 Lactococcus lactis subsp. lactis (strain IL1403)
Q98QL0 2.34e-85 290 35 7 482 3 rnr Ribonuclease R Mycoplasmopsis pulmonis (strain UAB CTIP)
Q9Z848 3.87e-75 261 28 16 665 3 rnr Ribonuclease R Chlamydia pneumoniae
Q9PR88 5.17e-75 261 27 8 652 3 rnr Ribonuclease R Ureaplasma parvum serovar 3 (strain ATCC 700970)
P75529 1.02e-74 261 28 11 626 3 rnr Ribonuclease R Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q9PK00 2.45e-73 256 29 16 663 3 rnr Ribonuclease R Chlamydia muridarum (strain MoPn / Nigg)
O84402 2.74e-73 256 29 14 660 3 rnr Ribonuclease R Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P47350 1.16e-72 255 26 14 646 1 rnr Ribonuclease R Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q66AH3 3.38e-70 246 30 14 652 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K4J2 3.38e-70 246 30 14 652 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FI01 1.65e-69 244 30 14 652 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TJ37 1.81e-69 244 30 14 652 3 rnb Exoribonuclease 2 Yersinia pestis (strain Pestoides F)
Q1CIZ7 1.81e-69 244 30 14 652 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Nepal516)
A9R8T9 1.81e-69 244 30 14 652 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Angola)
Q8ZED8 1.81e-69 244 30 14 652 3 rnb Exoribonuclease 2 Yersinia pestis
Q1C7L1 1.81e-69 244 30 14 652 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Antiqua)
B1JKP2 1.88e-69 244 30 14 652 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
B4EW02 3.33e-68 241 30 19 652 3 rnb Exoribonuclease 2 Proteus mirabilis (strain HI4320)
D3V184 1.42e-65 234 29 17 661 3 rnb Exoribonuclease 2 Xenorhabdus bovienii (strain SS-2004)
D0Z8E6 2.16e-65 233 31 18 655 3 rnb Exoribonuclease 2 Edwardsiella tarda (strain EIB202)
Q46363 2.88e-65 236 27 15 727 3 zam Acetazolamide conferring resistance protein zam Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A1JM34 7.5e-65 232 30 14 652 3 rnb Exoribonuclease 2 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A8GF49 2.02e-62 225 29 14 644 3 rnb Exoribonuclease 2 Serratia proteamaculans (strain 568)
Q6D5S7 4.01e-62 224 28 13 643 3 rnb Exoribonuclease 2 Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
B2VKS8 7.62e-62 223 29 18 651 3 rnb Exoribonuclease 2 Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q7MEL4 1.28e-61 223 27 14 670 3 rnb Exoribonuclease 2 Vibrio vulnificus (strain YJ016)
Q8D7K6 1.52e-61 223 27 14 670 3 rnb Exoribonuclease 2 Vibrio vulnificus (strain CMCP6)
C6DK05 1.8e-61 222 28 13 643 3 rnb Exoribonuclease 2 Pectobacterium carotovorum subsp. carotovorum (strain PC1)
A7MMD8 3.39e-61 221 29 16 655 3 rnb Exoribonuclease 2 Cronobacter sakazakii (strain ATCC BAA-894)
Q2NST6 1.47e-60 220 29 14 647 3 rnb Exoribonuclease 2 Sodalis glossinidius (strain morsitans)
Q87IJ9 2.67e-60 219 28 17 674 3 rnb Exoribonuclease 2 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
C3LW69 5.7e-60 219 28 16 675 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain M66-2)
Q9KLE1 5.7e-60 219 28 16 675 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F0G1 5.8e-59 216 28 15 659 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
A4WAX5 8.29e-58 212 28 15 653 3 rnb Exoribonuclease 2 Enterobacter sp. (strain 638)
Q7N4F5 4.81e-57 210 28 22 663 3 rnb Exoribonuclease 2 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B8D7G3 1.08e-56 209 28 17 647 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
B8D959 1.08e-56 209 28 17 647 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)
A6T7Z4 1.91e-56 208 27 13 645 3 rnb Exoribonuclease 2 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P57354 2.68e-56 208 28 17 647 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
B5XS03 4.11e-56 207 27 13 645 3 rnb Exoribonuclease 2 Klebsiella pneumoniae (strain 342)
B7VSB8 5.52e-56 207 26 16 681 3 rnb Exoribonuclease 2 Vibrio atlanticus (strain LGP32)
B7LRZ1 8.06e-56 206 28 13 647 3 rnb Exoribonuclease 2 Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q8Z7C9 3.29e-55 205 28 14 647 3 rnb Exoribonuclease 2 Salmonella typhi
B4TJI0 4.08e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella heidelberg (strain SL476)
B5FU93 4.08e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella dublin (strain CT_02021853)
B5R9Y0 4.45e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella gallinarum (strain 287/91 / NCTC 13346)
B4T6U4 4.96e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella newport (strain SL254)
B5BIE3 5.79e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella paratyphi A (strain AKU_12601)
Q5PCZ6 5.79e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5R490 7.39e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella enteritidis PT4 (strain P125109)
Q8ZP54 8.23e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MWU8 8.23e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4TX11 8.39e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella schwarzengrund (strain CVM19633)
B5F571 8.39e-55 204 28 14 647 3 rnb Exoribonuclease 2 Salmonella agona (strain SL483)
C0Q3R1 9.16e-55 203 28 14 647 3 rnb Exoribonuclease 2 Salmonella paratyphi C (strain RKS4594)
Q57NV9 9.16e-55 203 28 14 647 3 rnb Exoribonuclease 2 Salmonella choleraesuis (strain SC-B67)
A0KFR1 1.81e-54 203 30 21 655 3 rnb Exoribonuclease 2 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A9MQ20 2.05e-54 202 28 14 647 3 rnb Exoribonuclease 2 Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B7UR96 4.43e-54 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli O127:H6 (strain E2348/69 / EPEC)
B7N4A3 4.61e-54 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8FHT6 4.84e-54 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TI78 4.84e-54 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AAQ4 7.2e-54 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli O1:K1 / APEC
B7MLW3 7.2e-54 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli O45:K1 (strain S88 / ExPEC)
Q1RC77 9.37e-54 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli (strain UTI89 / UPEC)
B1ITG7 1.02e-53 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A7ZZM6 1.02e-53 201 28 14 647 3 rnb Exoribonuclease 2 Escherichia coli O9:H4 (strain HS)
P44440 1.59e-53 200 28 22 665 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B6IA03 1.64e-53 200 27 13 647 3 rnb Exoribonuclease 2 Escherichia coli (strain SE11)
P30850 1.64e-53 200 27 13 647 1 rnb Exoribonuclease 2 Escherichia coli (strain K12)
B1XBN7 1.64e-53 200 27 13 647 3 rnb Exoribonuclease 2 Escherichia coli (strain K12 / DH10B)
C4ZTY2 1.64e-53 200 27 13 647 3 rnb Exoribonuclease 2 Escherichia coli (strain K12 / MC4100 / BW2952)
B7NVR1 1.64e-53 200 27 13 647 3 rnb Exoribonuclease 2 Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7L4C3 1.64e-53 200 27 13 647 3 rnb Exoribonuclease 2 Escherichia coli (strain 55989 / EAEC)
A7ZLA9 1.64e-53 200 27 13 647 3 rnb Exoribonuclease 2 Escherichia coli O139:H28 (strain E24377A / ETEC)
P59107 2.12e-53 199 27 14 647 3 rnb Exoribonuclease 2 Shigella flexneri
Q0T5B1 2.14e-53 199 27 14 647 3 rnb Exoribonuclease 2 Shigella flexneri serotype 5b (strain 8401)
B7LY47 2.29e-53 199 27 13 647 3 rnb Exoribonuclease 2 Escherichia coli O8 (strain IAI1)
Q31ZY2 2.65e-53 199 28 14 647 3 rnb Exoribonuclease 2 Shigella boydii serotype 4 (strain Sb227)
B2U0I4 2.65e-53 199 28 14 647 3 rnb Exoribonuclease 2 Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q8K9Q5 2.98e-53 199 29 14 559 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
B1LGE7 4.13e-53 199 27 14 647 3 rnb Exoribonuclease 2 Escherichia coli (strain SMS-3-5 / SECEC)
Q1LTG8 4.49e-53 199 26 15 647 3 rnb Exoribonuclease 2 Baumannia cicadellinicola subsp. Homalodisca coagulata
B5YZR8 5.42e-53 198 27 14 647 3 rnb Exoribonuclease 2 Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X7D6 5.42e-53 198 27 14 647 3 rnb Exoribonuclease 2 Escherichia coli O157:H7
A5UFG3 6.05e-53 199 28 21 662 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain PittGG)
A8AG96 9.33e-53 197 27 14 647 3 rnb Exoribonuclease 2 Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q32GP4 1.63e-52 197 27 14 647 3 rnb Exoribonuclease 2 Shigella dysenteriae serotype 1 (strain Sd197)
Q9CP74 1.69e-52 197 28 21 670 3 rnb Exoribonuclease 2 Pasteurella multocida (strain Pm70)
Q3Z135 2.06e-52 197 27 14 647 3 rnb Exoribonuclease 2 Shigella sonnei (strain Ss046)
Q4QJL5 4.05e-51 193 27 24 679 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain 86-028NP)
A1SWZ6 2.18e-50 191 26 18 661 3 rnb Exoribonuclease 2 Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
B8F4C5 6.72e-50 190 27 23 668 3 rnb Exoribonuclease 2 Glaesserella parasuis serovar 5 (strain SH0165)
Q9CSH3 1.74e-49 192 27 20 666 1 Dis3 Exosome complex exonuclease RRP44 Mus musculus
O14040 1.8e-49 191 30 12 464 1 dis32 DIS3-like exonuclease 2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A6VN85 1.83e-48 186 27 21 661 3 rnb Exoribonuclease 2 Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
P56123 3.29e-48 184 34 6 333 3 rnr Ribonuclease R Helicobacter pylori (strain ATCC 700392 / 26695)
B0BP37 7.79e-48 184 27 21 667 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
B3GXJ4 1.28e-47 183 27 21 665 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3N0B9 1.75e-47 182 27 21 667 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Q65SI5 2.2e-47 182 26 18 668 3 rnb Exoribonuclease 2 Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q9Y2L1 4.21e-47 184 30 13 469 1 DIS3 Exosome complex exonuclease RRP44 Homo sapiens
Q17632 3.57e-46 182 29 11 489 1 dis-3 Probable exosome complex exonuclease RRP44 Caenorhabditis elegans
Q9ZJX9 7.36e-46 178 31 8 392 3 rnr Ribonuclease R Helicobacter pylori (strain J99 / ATCC 700824)
Q9SHL7 1.14e-45 180 28 15 560 2 RRP44A Exosome complex exonuclease RRP44 homolog A Arabidopsis thaliana
Q89AM0 6.35e-45 175 26 17 594 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q7VLX8 7.08e-45 175 25 19 667 3 rnb Exoribonuclease 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q0V9R3 6.66e-44 174 31 10 418 2 dis3l2 DIS3-like exonuclease 2 Xenopus tropicalis
Q09568 1.43e-43 173 29 13 466 1 disl-2 DIS3-like exonuclease 2 Caenorhabditis elegans
Q0WPN0 8.09e-41 165 29 5 358 2 SOV Inactive exonuclease DIS3L2 Arabidopsis thaliana
P0DM58 1.18e-40 165 29 5 358 1 SOV DIS3-like exonuclease 2 Arabidopsis thaliana
A2RV18 1.21e-40 165 26 19 684 2 dis3l DIS3-like exonuclease 1 Danio rerio
Q8IYB7 6.47e-40 162 30 11 412 1 DIS3L2 DIS3-like exonuclease 2 Homo sapiens
Q057Q9 7.47e-40 160 26 14 558 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Cinara cedri (strain Cc)
Q0P4R5 1.2e-39 162 26 21 704 2 dis3l DIS3-like exonuclease 1 Xenopus tropicalis
Q08162 3.96e-39 160 26 22 666 1 DIS3 Exosome complex exonuclease DIS3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q8CI75 6.32e-39 159 30 12 416 1 Dis3l2 DIS3-like exonuclease 2 Mus musculus
Q6GN11 5.73e-38 156 26 20 637 2 dis3l DIS3-like exonuclease 1 Xenopus laevis
Q5U2P0 2.75e-37 154 26 19 628 2 Dis3l DIS3-like exonuclease 1 Rattus norvegicus
A0JN80 6.34e-37 153 26 12 510 2 DIS3L DIS3-like exonuclease 1 Bos taurus
P37202 1.71e-36 152 27 12 438 1 dis3 Exosome complex exonuclease dis3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q8C0S1 1.69e-35 149 25 11 511 1 Dis3l DIS3-like exonuclease 1 Mus musculus
Q5R5N8 1.91e-35 149 27 15 514 2 DIS3L DIS3-like exonuclease 1 Pongo abelii
Q8TF46 2.13e-34 145 25 14 577 1 DIS3L DIS3-like exonuclease 1 Homo sapiens
P73177 2.33e-27 122 26 10 430 3 sll1290 Uncharacterized ribonuclease sll1290 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q6NQJ6 2.12e-17 90 26 9 373 2 RNR1 Ribonuclease II, chloroplastic/mitochondrial Arabidopsis thaliana
Q5AK62 2.67e-14 81 21 16 492 2 SSD1 Virulence protein SSD1 Candida albicans (strain SC5314 / ATCC MYA-2876)
P24276 4.46e-14 80 20 15 521 1 SSD1 Protein SSD1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P39112 1.85e-11 71 25 15 362 1 DSS1 Exoribonuclease II, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9BYK8 1.72e-10 68 37 5 144 1 HELZ2 3'-5' exoribonuclease HELZ2 Homo sapiens
E9QAM5 4.02e-10 67 25 11 373 1 Helz2 3'-5' exoribonuclease HELZ2 Mus musculus
O74454 2.86e-08 61 21 15 462 1 sts5 Protein sts5 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q57840 2.01e-06 52 34 1 92 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q980A3 4.98e-05 48 43 1 60 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
B8YB57 6.07e-05 48 43 1 60 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09705
Feature type CDS
Gene rnr
Product ribonuclease R
Location 43924 - 46365 (strand: 1)
Length 2442 (nucleotides) / 813 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1371
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF00773 RNB domain
PF08206 Ribonuclease B OB domain
PF08461 Ribonuclease R winged-helix domain
PF17876 Cold shock domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0557 Transcription (K) K Exoribonuclease R

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12573 ribonuclease R [EC:3.1.13.1] RNA degradation -

Protein Sequence

MSVEKQSNDPYQEREAEKYDAPIASREFILEIIRNHTKPVSRDDLAQELGLTGEEAQEALRRRLRAMERDGQLVFTRRQCYALPERLDLIKGTVIGHRDGFGFLRVEGQKDDLFIAQDQMKLCMHGDVILAQVMGADRKGRREARVVRVTEPKTGQIVGRYFMEEGMGFVVPDDSRLSFDILIPKESINGARMGNIVVVELTRRPAKRVQALGEITEVLGEKMGTSIAVDIALRKHDIPYTWPAQVERQVADVSENVPEEAKKGREDLRALPLVTIDGEDARDFDDAVHCEAKRGGGWRLWVAIADVSYYVRPQTALDDEARSRGNSVYFPSQVVPMLPEVLSNGVCSLNPQVDRLCMVCEMTISSKGKLSGYRFFEAVMSSHARLTYTKVWKILEGDEELREHYAPLVKHLEELHKLYKALAEARDERGAIAFESEEAKFIFNAEKRIDRIEPVQRNDAHKLIEECMIMANVAAARFVEKNNEPALYRVHDRPKEESVGNLRTVFNELGLTLPGGLTPEPKDYAQVMRDVAERPDSELLQTMLLRSMKQAIYDPDNRGHFGLALPAYAHFTSPIRRYPDLSLHRAIKYLLAKEQGEKPSKTGAWHYDIPGMLQLGEHTSMTERRADEATRDVADWLKCDFMQDQVGNVFKGLITSVTGFGFFVRLNELFIDGLVHVSTLDNDYYRYDNVGQRLIGESSNNVYRLGDEVEIRVEAVHMDERTIDFALISSTRRARNEGKTARTRARTGQTGDKRRSGKKDDVTREKNFEPDSAFRKKKKDGDAPKAPKSPKSPRTKKIEANIKAKRAKKKAAK

Flanking regions ( +/- flanking 50bp)

TTGTTGCTGACGGACAAATAGCGTCGGTCATGAAAACCACGGAGGACAAGATGTCAGTGGAAAAACAATCAAACGACCCTTACCAGGAACGCGAAGCGGAAAAATATGATGCCCCGATCGCGAGCCGTGAATTTATTCTTGAAATTATCCGCAACCACACCAAACCGGTCAGCCGCGACGATCTCGCGCAGGAACTGGGGTTAACCGGAGAAGAAGCACAGGAAGCATTGCGCCGCCGTCTGCGCGCAATGGAGCGTGACGGACAGTTGGTCTTTACCCGCCGTCAATGCTACGCGCTGCCGGAACGCCTTGATTTAATTAAAGGAACCGTTATCGGACACCGCGATGGCTTTGGTTTCTTACGCGTTGAAGGACAGAAAGACGACCTGTTTATCGCACAAGATCAGATGAAGCTGTGCATGCACGGCGACGTTATCCTGGCGCAGGTGATGGGTGCCGACCGCAAAGGGCGCCGCGAAGCCCGTGTGGTACGCGTAACTGAACCGAAAACCGGCCAGATAGTCGGGCGTTACTTTATGGAAGAAGGCATGGGGTTTGTCGTACCTGATGACAGCCGCCTGAGCTTTGATATCCTGATCCCGAAAGAATCCATCAACGGTGCCCGCATGGGTAACATCGTGGTGGTGGAACTGACCCGCCGCCCGGCCAAACGGGTACAGGCGCTCGGTGAAATCACTGAAGTACTGGGCGAAAAAATGGGCACCAGTATTGCCGTGGATATTGCCCTGCGCAAACATGATATTCCGTATACCTGGCCGGCTCAGGTTGAGCGTCAGGTGGCTGATGTCAGCGAAAATGTGCCGGAAGAAGCTAAAAAAGGGCGTGAAGATTTACGTGCGCTGCCATTAGTCACGATTGACGGCGAAGACGCCCGTGACTTTGATGATGCGGTTCACTGTGAAGCTAAACGCGGCGGTGGCTGGCGTCTGTGGGTGGCGATTGCTGACGTAAGTTACTATGTGCGCCCGCAAACCGCGCTGGATGACGAAGCACGCAGCAGGGGTAACTCGGTATACTTCCCGTCCCAGGTTGTTCCGATGCTGCCGGAAGTGCTTTCTAACGGAGTCTGTTCACTGAACCCGCAGGTTGATCGCCTGTGTATGGTCTGTGAAATGACTATCTCATCAAAAGGTAAATTATCCGGTTACCGTTTCTTTGAAGCCGTGATGAGTTCCCACGCCCGCCTGACTTACACCAAAGTATGGAAAATTCTTGAAGGGGATGAAGAGCTGCGTGAGCATTATGCGCCGCTGGTAAAACATCTCGAAGAACTGCATAAATTGTATAAAGCACTGGCGGAAGCACGTGATGAGCGTGGCGCGATTGCATTTGAATCAGAAGAAGCCAAATTTATCTTTAATGCAGAAAAACGGATCGATCGTATCGAGCCGGTGCAGCGTAATGATGCGCACAAACTGATTGAAGAGTGCATGATCATGGCGAACGTGGCAGCGGCAAGATTCGTTGAGAAAAACAACGAACCGGCACTGTACCGTGTCCATGACCGTCCGAAAGAAGAGAGCGTCGGTAATCTGCGGACCGTATTCAACGAGCTGGGACTGACCCTGCCGGGCGGACTGACACCGGAGCCGAAAGATTATGCGCAGGTCATGCGTGATGTGGCAGAGCGTCCTGACAGTGAACTGTTACAGACCATGCTGTTGCGCTCCATGAAGCAGGCAATTTACGACCCGGACAACCGTGGACACTTTGGCTTGGCGCTGCCGGCGTATGCGCACTTTACATCACCTATCCGTCGTTATCCGGATCTATCGTTACACCGCGCTATCAAATATCTGCTGGCAAAAGAGCAGGGTGAGAAACCATCCAAAACCGGCGCATGGCACTACGATATACCAGGCATGCTGCAACTGGGGGAACACACCTCCATGACCGAGCGCCGCGCGGACGAAGCAACGCGTGATGTGGCAGACTGGCTGAAGTGTGACTTTATGCAGGATCAGGTCGGTAATGTATTCAAAGGGCTGATTACCAGTGTGACCGGTTTCGGGTTCTTTGTCCGTCTGAATGAGTTGTTTATTGATGGTCTGGTACACGTATCAACACTGGATAATGACTATTACCGCTATGATAATGTCGGCCAGCGCCTGATTGGTGAGTCCTCAAATAATGTGTACCGCCTCGGTGATGAAGTTGAAATCCGCGTGGAAGCTGTACATATGGATGAGCGCACGATTGATTTCGCATTGATTTCAAGCACGCGACGCGCCCGCAATGAAGGTAAAACCGCGAGAACCCGTGCGCGTACCGGTCAGACCGGTGATAAACGCCGCAGCGGGAAAAAAGACGACGTTACCCGTGAGAAAAACTTCGAGCCGGACAGTGCGTTCCGCAAGAAGAAAAAAGACGGTGACGCGCCGAAAGCACCAAAAAGCCCGAAATCACCCCGGACCAAAAAAATTGAAGCGAATATAAAGGCGAAGCGCGCGAAGAAAAAAGCCGCAAAATAATTGCCTTTAGTTCATTTTTTCCCCGGTGAGGCGGTAGCGCCTCACCGGGT