Homologs in group_1371

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08485 FBDBKF_08485 77.7 Morganella morganii S1 rnr ribonuclease R
EHELCC_13040 EHELCC_13040 77.7 Morganella morganii S2 rnr ribonuclease R
NLDBIP_13380 NLDBIP_13380 77.7 Morganella morganii S4 rnr ribonuclease R
LHKJJB_13175 LHKJJB_13175 77.7 Morganella morganii S3 rnr ribonuclease R
HKOGLL_11855 HKOGLL_11855 77.7 Morganella morganii S5 rnr ribonuclease R
F4V73_RS09705 F4V73_RS09705 76.0 Morganella psychrotolerans rnr ribonuclease R

Distribution of the homologs in the orthogroup group_1371

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1371

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21499 0.0 1235 75 2 777 1 rnr Ribonuclease R Escherichia coli (strain K12)
P30851 0.0 1231 75 2 777 3 rnr Ribonuclease R Shigella flexneri
Q9KNY1 0.0 1064 66 1 743 3 rnr Ribonuclease R Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P40611 0.0 1055 66 1 741 3 rnr Ribonuclease R Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
P44907 0.0 1026 63 2 755 3 rnr Ribonuclease R Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K917 0.0 786 51 5 733 3 rnr Ribonuclease R Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57628 0.0 781 51 3 734 3 rnr Ribonuclease R Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O32231 4.55e-172 519 38 8 731 1 rnr Ribonuclease R Bacillus subtilis (strain 168)
O67834 1.33e-149 458 39 3 649 3 rnr Ribonuclease R Aquifex aeolicus (strain VF5)
P54084 7.74e-140 424 50 3 429 3 rnr Ribonuclease R (Fragment) Acidithiobacillus ferrooxidans
Q9WZI1 1.64e-130 409 35 11 708 3 rnr Ribonuclease R Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9CH00 3.09e-128 406 33 16 782 3 rnr1 Ribonuclease R 1 Lactococcus lactis subsp. lactis (strain IL1403)
Q02146 2.81e-91 304 32 10 661 3 rnr2 Ribonuclease R 2 Lactococcus lactis subsp. lactis (strain IL1403)
Q98QL0 1.55e-85 290 32 10 576 3 rnr Ribonuclease R Mycoplasmopsis pulmonis (strain UAB CTIP)
Q9PR88 2.57e-81 279 28 9 657 3 rnr Ribonuclease R Ureaplasma parvum serovar 3 (strain ATCC 700970)
P47350 2.94e-80 276 27 12 651 1 rnr Ribonuclease R Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
O84402 9.92e-79 271 30 15 668 3 rnr Ribonuclease R Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P75529 1.21e-78 272 27 11 647 3 rnr Ribonuclease R Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q9PK00 1.63e-77 268 30 19 671 3 rnr Ribonuclease R Chlamydia muridarum (strain MoPn / Nigg)
Q9Z848 4.29e-75 261 27 17 670 3 rnr Ribonuclease R Chlamydia pneumoniae
Q66AH3 1.58e-61 223 29 18 649 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K4J2 1.58e-61 223 29 18 649 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FI01 3.85e-61 222 29 18 649 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TJ37 6.01e-61 221 29 17 648 3 rnb Exoribonuclease 2 Yersinia pestis (strain Pestoides F)
Q1CIZ7 6.01e-61 221 29 17 648 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Nepal516)
A9R8T9 6.01e-61 221 29 17 648 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Angola)
Q8ZED8 6.01e-61 221 29 17 648 3 rnb Exoribonuclease 2 Yersinia pestis
Q1C7L1 6.01e-61 221 29 17 648 3 rnb Exoribonuclease 2 Yersinia pestis bv. Antiqua (strain Antiqua)
B1JKP2 1.45e-60 220 29 17 648 3 rnb Exoribonuclease 2 Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
B4EW02 5.64e-59 216 28 20 666 3 rnb Exoribonuclease 2 Proteus mirabilis (strain HI4320)
Q46363 8.55e-57 212 25 17 721 3 zam Acetazolamide conferring resistance protein zam Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
D3V184 5.24e-55 204 27 20 666 3 rnb Exoribonuclease 2 Xenorhabdus bovienii (strain SS-2004)
A1JM34 2.44e-53 199 28 17 648 3 rnb Exoribonuclease 2 Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q87IJ9 1.66e-52 197 26 17 678 3 rnb Exoribonuclease 2 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
B7VSB8 1.49e-51 195 26 20 696 3 rnb Exoribonuclease 2 Vibrio atlanticus (strain LGP32)
D0Z8E6 2.22e-51 194 27 18 663 3 rnb Exoribonuclease 2 Edwardsiella tarda (strain EIB202)
Q7MEL4 2.34e-51 194 25 14 676 3 rnb Exoribonuclease 2 Vibrio vulnificus (strain YJ016)
Q8D7K6 4.11e-51 194 25 14 676 3 rnb Exoribonuclease 2 Vibrio vulnificus (strain CMCP6)
P56123 4.98e-51 193 33 10 406 3 rnr Ribonuclease R Helicobacter pylori (strain ATCC 700392 / 26695)
Q7N4F5 1.09e-50 192 27 20 656 3 rnb Exoribonuclease 2 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A8GF49 1.59e-50 191 27 17 655 3 rnb Exoribonuclease 2 Serratia proteamaculans (strain 568)
Q6D5S7 2.5e-50 191 27 17 651 3 rnb Exoribonuclease 2 Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A7MMD8 6.02e-50 190 26 14 654 3 rnb Exoribonuclease 2 Cronobacter sakazakii (strain ATCC BAA-894)
B2VKS8 2.87e-49 188 27 19 652 3 rnb Exoribonuclease 2 Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
C6DK05 4.39e-49 187 27 16 650 3 rnb Exoribonuclease 2 Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B8D7G3 4.45e-49 187 27 21 651 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
B8D959 4.45e-49 187 27 21 651 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)
C3LW69 8.42e-49 187 25 16 676 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain M66-2)
Q9KLE1 8.42e-49 187 25 16 676 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q2NST6 8.56e-49 186 27 19 659 3 rnb Exoribonuclease 2 Sodalis glossinidius (strain morsitans)
Q9ZJX9 1.39e-48 186 32 11 421 3 rnr Ribonuclease R Helicobacter pylori (strain J99 / ATCC 700824)
B5XS03 1.62e-48 186 27 18 660 3 rnb Exoribonuclease 2 Klebsiella pneumoniae (strain 342)
P57354 2.54e-48 185 27 21 651 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9Q5 2.81e-48 185 28 12 545 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A6T7Z4 4e-48 184 26 16 656 3 rnb Exoribonuclease 2 Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A5F0G1 7.21e-48 184 25 13 651 3 rnb Exoribonuclease 2 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
O14040 3.23e-47 185 30 10 459 1 dis32 DIS3-like exonuclease 2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A5UFG3 3.27e-47 182 26 20 660 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain PittGG)
Q7VLX8 4.14e-47 182 25 20 666 3 rnb Exoribonuclease 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
A4WAX5 5.69e-47 181 25 16 655 3 rnb Exoribonuclease 2 Enterobacter sp. (strain 638)
P44440 7.51e-47 181 26 21 663 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B7LRZ1 1.63e-46 180 26 14 650 3 rnb Exoribonuclease 2 Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A1SWZ6 2.84e-46 179 27 14 531 3 rnb Exoribonuclease 2 Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
Q8FHT6 5.49e-46 178 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TI78 5.49e-46 178 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7N4A3 5.81e-46 178 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B8F4C5 6.2e-46 178 26 21 668 3 rnb Exoribonuclease 2 Glaesserella parasuis serovar 5 (strain SH0165)
A8AG96 6.21e-46 178 26 14 650 3 rnb Exoribonuclease 2 Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
P59107 6.76e-46 178 26 14 650 3 rnb Exoribonuclease 2 Shigella flexneri
Q9CP74 7.39e-46 178 27 22 665 3 rnb Exoribonuclease 2 Pasteurella multocida (strain Pm70)
B7UR96 7.43e-46 178 26 15 651 3 rnb Exoribonuclease 2 Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q0T5B1 7.5e-46 178 26 14 650 3 rnb Exoribonuclease 2 Shigella flexneri serotype 5b (strain 8401)
Q32GP4 8.97e-46 177 26 14 650 3 rnb Exoribonuclease 2 Shigella dysenteriae serotype 1 (strain Sd197)
B5R9Y0 9.58e-46 177 26 14 648 3 rnb Exoribonuclease 2 Salmonella gallinarum (strain 287/91 / NCTC 13346)
A1AAQ4 9.76e-46 177 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O1:K1 / APEC
B7MLW3 9.76e-46 177 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O45:K1 (strain S88 / ExPEC)
B4TJI0 1.36e-45 177 26 14 648 3 rnb Exoribonuclease 2 Salmonella heidelberg (strain SL476)
B5FU93 1.36e-45 177 26 14 648 3 rnb Exoribonuclease 2 Salmonella dublin (strain CT_02021853)
B1ITG7 1.46e-45 177 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A7ZZM6 1.46e-45 177 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O9:H4 (strain HS)
Q1RC77 1.53e-45 177 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli (strain UTI89 / UPEC)
Q8Z7C9 1.58e-45 177 26 14 648 3 rnb Exoribonuclease 2 Salmonella typhi
A6VN85 1.79e-45 177 26 21 667 3 rnb Exoribonuclease 2 Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
B5YZR8 1.89e-45 177 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X7D6 1.89e-45 177 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O157:H7
Q4QJL5 2.04e-45 177 26 21 671 3 rnb Exoribonuclease 2 Haemophilus influenzae (strain 86-028NP)
B6IA03 2.23e-45 176 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli (strain SE11)
P30850 2.23e-45 176 26 14 650 1 rnb Exoribonuclease 2 Escherichia coli (strain K12)
B1XBN7 2.23e-45 176 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli (strain K12 / DH10B)
C4ZTY2 2.23e-45 176 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli (strain K12 / MC4100 / BW2952)
B7NVR1 2.23e-45 176 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7L4C3 2.23e-45 176 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli (strain 55989 / EAEC)
A7ZLA9 2.23e-45 176 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O139:H28 (strain E24377A / ETEC)
B4T6U4 2.3e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella newport (strain SL254)
B5R490 2.41e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella enteritidis PT4 (strain P125109)
B5BIE3 2.55e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella paratyphi A (strain AKU_12601)
Q5PCZ6 2.55e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B7LY47 3.14e-45 176 26 14 650 3 rnb Exoribonuclease 2 Escherichia coli O8 (strain IAI1)
Q8ZP54 3.22e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MWU8 3.22e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q31ZY2 3.44e-45 176 26 14 650 3 rnb Exoribonuclease 2 Shigella boydii serotype 4 (strain Sb227)
B2U0I4 3.44e-45 176 26 14 650 3 rnb Exoribonuclease 2 Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q17632 4.15e-45 179 31 10 416 1 dis-3 Probable exosome complex exonuclease RRP44 Caenorhabditis elegans
B4TX11 4.16e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella schwarzengrund (strain CVM19633)
B5F571 4.16e-45 176 26 14 648 3 rnb Exoribonuclease 2 Salmonella agona (strain SL483)
C0Q3R1 5.06e-45 175 26 14 648 3 rnb Exoribonuclease 2 Salmonella paratyphi C (strain RKS4594)
Q57NV9 5.06e-45 175 26 14 648 3 rnb Exoribonuclease 2 Salmonella choleraesuis (strain SC-B67)
B1LGE7 5.67e-45 175 25 14 650 3 rnb Exoribonuclease 2 Escherichia coli (strain SMS-3-5 / SECEC)
Q1LTG8 1.06e-44 174 25 15 640 3 rnb Exoribonuclease 2 Baumannia cicadellinicola subsp. Homalodisca coagulata
A9MQ20 1.33e-44 174 26 14 648 3 rnb Exoribonuclease 2 Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q3Z135 1.8e-44 174 25 14 650 3 rnb Exoribonuclease 2 Shigella sonnei (strain Ss046)
Q65SI5 1.92e-44 174 26 25 681 3 rnb Exoribonuclease 2 Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q9CSH3 2.2e-44 176 28 12 502 1 Dis3 Exosome complex exonuclease RRP44 Mus musculus
Q0V9R3 6.75e-44 174 31 11 433 2 dis3l2 DIS3-like exonuclease 2 Xenopus tropicalis
A0KFR1 7.39e-44 172 27 22 662 3 rnb Exoribonuclease 2 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
B3GXJ4 9.54e-44 172 26 23 674 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
B0BP37 1.45e-43 171 27 23 674 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
A3N0B9 2.54e-43 171 27 23 674 3 rnb Exoribonuclease 2 Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Q09568 2.75e-43 172 27 21 599 1 disl-2 DIS3-like exonuclease 2 Caenorhabditis elegans
Q9Y2L1 5.05e-43 172 30 9 414 1 DIS3 Exosome complex exonuclease RRP44 Homo sapiens
Q0WPN0 1.44e-41 168 30 5 369 2 SOV Inactive exonuclease DIS3L2 Arabidopsis thaliana
P0DM58 1.75e-41 167 30 5 369 1 SOV DIS3-like exonuclease 2 Arabidopsis thaliana
Q8CI75 8.3e-41 165 26 20 629 1 Dis3l2 DIS3-like exonuclease 2 Mus musculus
Q08162 3e-40 164 27 18 600 1 DIS3 Exosome complex exonuclease DIS3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q8IYB7 4.42e-38 156 30 11 410 1 DIS3L2 DIS3-like exonuclease 2 Homo sapiens
Q0P4R5 1.07e-37 155 25 19 708 2 dis3l DIS3-like exonuclease 1 Xenopus tropicalis
Q9SHL7 5.94e-37 153 30 9 346 2 RRP44A Exosome complex exonuclease RRP44 homolog A Arabidopsis thaliana
Q89AM0 2.48e-36 149 23 21 654 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q057Q9 1.26e-35 147 25 13 505 3 rnb Exoribonuclease 2 Buchnera aphidicola subsp. Cinara cedri (strain Cc)
P37202 4.13e-35 147 25 12 502 1 dis3 Exosome complex exonuclease dis3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q6GN11 9.87e-35 146 26 13 531 2 dis3l DIS3-like exonuclease 1 Xenopus laevis
Q5R5N8 1.27e-32 140 26 15 529 2 DIS3L DIS3-like exonuclease 1 Pongo abelii
A2RV18 1.42e-32 139 25 14 550 2 dis3l DIS3-like exonuclease 1 Danio rerio
Q8TF46 7.27e-32 137 26 12 484 1 DIS3L DIS3-like exonuclease 1 Homo sapiens
Q8C0S1 1.15e-31 137 26 13 525 1 Dis3l DIS3-like exonuclease 1 Mus musculus
Q5U2P0 1.86e-31 136 25 12 521 2 Dis3l DIS3-like exonuclease 1 Rattus norvegicus
A0JN80 3.13e-31 135 25 11 520 2 DIS3L DIS3-like exonuclease 1 Bos taurus
P73177 9.54e-25 114 27 6 362 3 sll1290 Uncharacterized ribonuclease sll1290 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q6NQJ6 4.34e-16 86 27 9 328 2 RNR1 Ribonuclease II, chloroplastic/mitochondrial Arabidopsis thaliana
P24276 1.57e-12 75 21 18 516 1 SSD1 Protein SSD1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P39112 8.62e-12 72 24 14 361 1 DSS1 Exoribonuclease II, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
E9QAM5 1.04e-10 69 24 11 388 1 Helz2 3'-5' exoribonuclease HELZ2 Mus musculus
Q1MTN7 1.49e-10 68 24 10 374 2 rpm1 Exoribonuclease II, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q5AK62 1.78e-10 68 20 15 430 2 SSD1 Virulence protein SSD1 Candida albicans (strain SC5314 / ATCC MYA-2876)
O74454 1.18e-08 62 21 12 457 1 sts5 Protein sts5 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9BYK8 1.31e-08 62 33 4 142 1 HELZ2 3'-5' exoribonuclease HELZ2 Homo sapiens
Q57840 3.08e-07 55 36 1 88 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P46837 2.19e-05 52 31 3 126 1 yhgF Protein YhgF Escherichia coli (strain K12)
Q980A3 0.000259 46 39 1 61 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
B8YB57 0.000322 45 39 1 61 1 rpo7 DNA-directed RNA polymerase subunit Rpo7 Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS16780
Feature type CDS
Gene rnr
Product ribonuclease R
Location 3699300 - 3701789 (strand: 1)
Length 2490 (nucleotides) / 829 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1371
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF00773 RNB domain
PF08206 Ribonuclease B OB domain
PF08461 Ribonuclease R winged-helix domain
PF17876 Cold shock domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0557 Transcription (K) K Exoribonuclease R

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12573 ribonuclease R [EC:3.1.13.1] RNA degradation -

Protein Sequence

MSKDPFQDREAEKYASPIASREFILEEMKKRPAPMSREDIAQALKISGEENLEALRRRLRAMERDGQLVFTRRQCYALPERLDLWKGKVIGHRDGYGFLRAEGQKDDLYLSQDEMKKTMHGDVILAQPLGMDRKGRREGRVVRVLEPRNSQIVGRYFIESGMGFVVPDDSRLSFDILIPKEDIMGARMGNVVVVEVTTRPTRRTQAVGRIVEILGETMGTGIAVEIALRTHEIPHTWPPKVEKEIADLKEDVPESAKQGRVDLRDLPLITIDGEDARDFDDAVYCQRKKGGGWRLWVAIADVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSEQGRLSSYKFYEAVMSSHARMTYTKVWKIIQGDEELREHYQPIVKDIEHLYELYQALDKAREQRGAIGFESEEAKFIFNAERRIDRIEPVVRNDAHKLIEECMILANIAAARFVEKNEEPALYRVHDKPKEESVMNLRSVFNELGLTLPGGLTPEPGDYARVMKEVEERPDHEMLQTMVLRSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLALHRAIKYQIAKQQGHGSQRWTPTGGYHSDMDTMLQLGEHCSLTERRADEATRDVADWLKCDFMLDQIGQQFTGIITSVTGFGFFVRLNDLFIDGLVHVSTLNNDYYQFDNVGQRLIGESSGQVYRLGDEVEVKVEAVSMDERTIDFSLISTTRKARNPGKTARVRALKGGKDKKNASSSKSRRRDASKDKNFEPDSAFRNGKSSKEKQSKDKVIKEKIAKDKASTKRKKASAQTKKIEAKLKAKRAAKRTKA

Flanking regions ( +/- flanking 50bp)

GAAGATGTTTGAGTCGACAATTTCATCATTCTGATAGCTTGGAGGTCATAATGTCCAAAGATCCTTTTCAGGATAGAGAAGCCGAAAAATACGCCTCTCCAATTGCTAGTCGTGAATTTATTTTAGAAGAAATGAAGAAACGCCCGGCCCCGATGAGCCGTGAAGATATCGCGCAGGCATTGAAAATTTCAGGTGAAGAAAATCTGGAAGCATTACGTCGTCGTTTACGGGCTATGGAACGAGATGGTCAGTTAGTTTTTACTCGACGTCAGTGTTATGCCTTACCTGAACGCCTCGATCTTTGGAAAGGTAAAGTTATCGGTCACCGTGACGGCTATGGTTTTTTACGTGCGGAAGGCCAAAAGGATGATCTCTATCTTTCACAAGATGAAATGAAAAAAACCATGCATGGTGATGTGATTTTAGCGCAACCCCTAGGCATGGATAGAAAAGGGCGTCGAGAAGGTCGCGTCGTTCGTGTTCTTGAACCCAGAAACAGCCAAATTGTTGGGCGCTATTTTATTGAGTCAGGTATGGGATTTGTGGTACCTGACGATAGCCGTTTAAGTTTTGATATTCTTATCCCTAAAGAAGATATCATGGGCGCACGTATGGGGAATGTGGTGGTGGTTGAAGTTACCACAAGACCAACACGGCGTACTCAAGCGGTAGGACGCATTGTTGAAATTTTAGGTGAAACTATGGGGACGGGAATTGCGGTAGAAATTGCACTACGCACCCATGAAATTCCTCATACTTGGCCACCTAAAGTAGAAAAAGAAATCGCTGATTTAAAAGAGGATGTGCCAGAGTCAGCGAAACAAGGTCGCGTTGATTTGCGTGATCTCCCTTTAATTACCATTGATGGTGAAGATGCGCGAGACTTTGATGATGCCGTTTATTGCCAGCGTAAAAAAGGCGGGGGCTGGCGTTTATGGGTGGCAATTGCAGATGTGAGCTATTATGTACGCCCTCAAACTGCATTAGACACAGAAGCGCGTAGCCGAGGCAATTCGGTCTATTTTCCTTCTCAAGTTGTCCCTATGCTGCCAGAAGTACTGTCGAATGGATTATGTTCATTAAATCCACAAGTCGACCGTTTATGTATGGTTTGTGAAATGACCGTTTCTGAGCAGGGGCGCCTTTCATCTTATAAATTCTATGAAGCCGTAATGAGCTCTCATGCGCGAATGACTTACACCAAAGTATGGAAAATCATTCAAGGTGATGAAGAGTTACGTGAGCACTACCAACCGATCGTAAAAGATATTGAGCACCTTTATGAGCTATACCAAGCCCTCGATAAGGCCCGTGAACAGCGTGGTGCCATTGGTTTTGAATCGGAAGAAGCGAAATTTATTTTCAATGCAGAACGTCGTATCGATCGTATCGAACCGGTTGTACGTAATGATGCACATAAATTAATTGAAGAGTGCATGATTTTAGCCAATATTGCGGCGGCGCGTTTTGTTGAGAAAAATGAAGAGCCTGCGTTATATCGTGTGCATGATAAACCCAAAGAAGAGAGCGTAATGAATTTACGTTCGGTATTTAATGAACTGGGTTTAACGTTACCGGGAGGATTAACACCGGAGCCAGGCGATTATGCGCGGGTCATGAAAGAAGTCGAAGAGCGTCCAGATCACGAAATGCTACAAACCATGGTATTGCGCTCCATGAAACAGGCAATTTACGATCCTGAAAATCGAGGTCACTTTGGTTTAGCATTAAAATCTTATGCTCACTTCACTTCACCCATCCGTCGTTATCCTGACTTAGCATTACATCGTGCTATTAAATACCAGATAGCGAAACAGCAAGGCCATGGCTCACAACGCTGGACCCCAACGGGTGGCTATCATAGTGATATGGATACCATGCTTCAGTTAGGGGAACACTGCTCTTTAACTGAACGTCGGGCGGATGAAGCAACCCGTGATGTGGCTGATTGGCTGAAATGTGATTTTATGCTTGATCAAATAGGTCAGCAATTTACCGGTATTATTACCAGTGTCACTGGTTTCGGTTTCTTTGTGCGCTTAAACGATCTATTTATTGATGGTCTTGTTCATGTATCCACATTAAATAATGATTACTATCAATTTGATAATGTTGGACAACGTTTAATTGGTGAGTCATCAGGTCAGGTATATCGTCTGGGTGATGAAGTTGAAGTGAAAGTTGAAGCGGTCAGTATGGATGAACGTACTATTGACTTCTCATTGATTTCAACAACACGTAAAGCACGTAACCCCGGGAAAACAGCACGTGTTCGTGCGTTAAAAGGGGGAAAAGACAAGAAAAATGCGAGCAGTAGTAAGTCTCGTCGTCGTGATGCCAGCAAAGACAAAAACTTTGAACCTGATAGTGCCTTTAGGAACGGTAAATCAAGTAAAGAAAAACAGAGCAAAGATAAAGTCATTAAAGAGAAAATTGCGAAGGACAAGGCGAGTACTAAACGTAAAAAAGCCTCTGCACAAACCAAAAAGATAGAGGCGAAATTAAAAGCCAAACGTGCGGCGAAACGCACTAAAGCGTAGTTATACAACGAAGTCATTCACTGTTTGACTCCTATTAAAAAGGCGGATTT