Homologs in group_819

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03330 FBDBKF_03330 100.0 Morganella morganii S1 rng ribonuclease G
EHELCC_07205 EHELCC_07205 100.0 Morganella morganii S2 rng ribonuclease G
LHKJJB_07065 LHKJJB_07065 100.0 Morganella morganii S3 rng ribonuclease G
HKOGLL_03865 HKOGLL_03865 100.0 Morganella morganii S5 rng ribonuclease G
F4V73_RS11605 F4V73_RS11605 96.5 Morganella psychrotolerans rng ribonuclease G
PMI_RS18085 PMI_RS18085 84.9 Proteus mirabilis HI4320 rng ribonuclease G

Distribution of the homologs in the orthogroup group_819

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_819

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0A0H3NGK0 0.0 829 83 0 489 1 rng Ribonuclease G Salmonella typhimurium (strain SL1344)
P0A9J3 0.0 827 82 0 489 3 rng Ribonuclease G Shigella flexneri
P0A9J0 0.0 827 82 0 489 1 rng Ribonuclease G Escherichia coli (strain K12)
P0A9J1 0.0 827 82 0 489 3 rng Ribonuclease G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9J2 0.0 827 82 0 489 3 rng Ribonuclease G Escherichia coli O157:H7
P45175 0.0 702 70 1 487 3 rng Ribonuclease G Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P71905 5.57e-87 289 38 5 413 1 rne Ribonuclease E Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
A0R152 1.57e-86 290 38 5 411 1 rne Ribonuclease E Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P44443 6.65e-79 267 39 6 417 3 rne Ribonuclease E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P21513 2.56e-78 267 37 6 429 1 rne Ribonuclease E Escherichia coli (strain K12)
Q8YP69 5.37e-78 260 36 3 379 1 rne Ribonuclease E Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q89AH3 2.11e-76 248 38 7 395 3 rne Putative ribonuclease E Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9J9 3.47e-74 255 36 8 434 3 rne Ribonuclease E Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P72656 1.55e-73 248 36 4 380 1 rne Ribonuclease E Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P57429 4.95e-71 245 35 5 431 3 rne Ribonuclease E Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P51211 9.32e-67 226 34 3 364 3 rne Ribonuclease E/G-like protein Porphyra purpurea
Q1XDS6 1.38e-66 225 34 3 368 3 rne Ribonuclease E/G-like protein Neopyropia yezoensis
F4IV66 3.53e-57 207 36 6 346 1 RNE Ribonuclease E/G-like protein, chloroplastic Arabidopsis thaliana
O78453 2.8e-18 90 23 12 384 3 rne Ribonuclease E/G-like protein Guillardia theta
Q9TL10 1.02e-09 63 23 13 369 3 rne Ribonuclease E/G-like protein Nephroselmis olivacea
Q8TY07 4.26e-05 49 42 1 68 3 fau-1 Probable ribonuclease FAU-1 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_07530
Feature type CDS
Gene rng
Product ribonuclease G
Location 178014 - 179483 (strand: 1)
Length 1470 (nucleotides) / 489 (amino acids)
In genomic island -

Contig

Accession ZDB_522
Length 269640 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_819
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF10150 Ribonuclease E/G family
PF20833 RNase E/G, Thioredoxin-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1530 Translation, ribosomal structure and biogenesis (J) J Ribonuclease G or E

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08301 ribonuclease G [EC:3.1.26.-] - -

Protein Sequence

MTAELLVNVTPSETRVAYITGGILQEIHIEREAKRGIVGNIYKGRVSRVLPGMQAAFIDIGLDKAAFLHASDIIPHTECISGDEKEKFRTRDIGELVHQGQDIIVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEEERERLKNIVAGYCDEDGGFIIRTAAEGVGEEELTSDAAFLRRLWTKVIQRKKRNTTRTKIYGELALAHRILRDFAGESLDRIRIDSRLSFKELQEFVDDYIPEMTAKLELYQGSQPIFDLYDTENEIQRAMERKVEMKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMTDEDHRRRVLSSLELALAKDRVKTTINGFSQLGLVEMTRKRTRESLEHVLCEKCPTCQGRGSVRSVETVCYEILREIVRVHHLLDVDRFLVYASPAVTEALQGDESHALAEVEIFVGKQVQVRAEPLYSQEHFDVVMM

Flanking regions ( +/- flanking 50bp)

GATACCCTGAACGGGGTTGTACCGGAACATATTGACGGGAAAGAAATACCATGACAGCCGAGCTTTTAGTCAACGTGACCCCGTCTGAAACACGGGTCGCTTATATTACCGGCGGGATCCTTCAGGAAATTCATATTGAGCGCGAGGCTAAACGCGGGATCGTCGGCAATATCTATAAAGGGCGTGTGAGCCGGGTGCTGCCCGGTATGCAGGCGGCCTTTATCGATATTGGCCTGGATAAAGCAGCCTTTCTGCATGCCTCGGATATTATTCCGCATACAGAATGTATTTCCGGGGATGAAAAAGAGAAATTCCGCACCCGCGATATCGGGGAACTGGTCCATCAGGGGCAGGATATTATTGTGCAGGTGGTCAAAGATCCGCTGGGCACCAAAGGCGCGCGTCTGACCACCGATATCACGCTGCCGTCCCGCTACCTGGTGTTTATGCCGGGTGCCTCTCACGTAGGGGTTTCCCAGCGCATTGAGAGCGAAGAAGAGCGCGAGCGCCTGAAAAACATTGTGGCGGGTTATTGTGATGAGGACGGCGGTTTTATTATCCGCACAGCAGCGGAAGGGGTCGGGGAAGAAGAACTGACTTCTGATGCCGCGTTCCTGCGCCGGTTGTGGACCAAAGTTATCCAGCGCAAAAAACGCAATACCACCCGTACCAAAATCTACGGTGAACTGGCGCTGGCACACCGCATTCTGCGGGATTTTGCCGGTGAGTCACTCGACCGCATCCGGATTGACTCCCGCCTGAGCTTTAAAGAGTTACAGGAATTTGTGGATGATTACATCCCGGAAATGACCGCCAAACTGGAACTGTACCAGGGCAGTCAGCCGATTTTTGATCTCTATGATACCGAAAATGAAATCCAGCGGGCGATGGAGCGCAAGGTCGAAATGAAATCAGGCGGATACCTGATTATCGACCAGACGGAGGCGATGACCACCATCGATATCAACACCGGTGCGTTTGTCGGGCACCGCAATCTGGAAGAAACTATTTTCAATACCAATATCGAGGCCACCCAGGCGATTGCGCGGCAGTTACGTCTGCGCAACCTCGGTGGTATCATTATCATTGATTTCATTGATATGACCGATGAGGATCACCGTCGCCGGGTGCTGAGTTCGCTGGAACTGGCGCTGGCCAAAGATCGCGTGAAGACCACTATCAACGGTTTTTCACAGCTCGGACTGGTGGAGATGACCCGCAAACGCACGCGGGAGAGCCTCGAACATGTCCTGTGCGAGAAATGCCCGACCTGTCAGGGGCGCGGCAGTGTCCGCTCGGTGGAAACGGTCTGCTATGAAATTCTGCGCGAGATTGTCCGCGTGCACCATCTGCTGGATGTTGACCGCTTCCTCGTCTATGCCTCACCAGCAGTGACTGAGGCATTGCAGGGGGATGAATCCCATGCCCTGGCAGAGGTGGAGATTTTTGTCGGTAAACAGGTTCAGGTTCGCGCCGAACCGCTCTACAGCCAGGAACATTTTGATGTCGTCATGATGTAATTCATTGGCGGTATACTGCCGGATATAAGCGGATATCCGGTTCCGCCGGC