Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00367, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 36 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_82 | FBDBKF_02425 | 179086 | 180702 | -1 | malX | Phosphotransferase system IIB components | Morganella morganii S1 |
1 | group_803 | FBDBKF_03790 | 161317 | 162873 | -1 | ptsG2 | Phosphotransferase system IIB components | Morganella morganii S1 |
2 | group_82 | FBDBKF_04790 | 159711 | 161282 | 1 | malX | Phosphotransferase system IIB components | Morganella morganii S1 |
3 | group_328 | FBDBKF_09915 | 78517 | 80547 | -1 | nagE | Phosphotransferase system IIA component | Morganella morganii S1 |
4 | group_198 | FBDBKF_11815 | 14449 | 15894 | 1 | murP | PTS N-acetylmuramic acid transporter subunit IIBC | Morganella morganii S1 |
5 | group_82 | EHELCC_02895 | 566906 | 568522 | -1 | malX | Phosphotransferase system IIB components | Morganella morganii S2 |
6 | group_328 | EHELCC_04715 | 270482 | 272512 | -1 | nagE | Phosphotransferase system IIA component | Morganella morganii S2 |
7 | group_82 | EHELCC_06080 | 219168 | 220739 | 1 | malX | Phosphotransferase system IIB components | Morganella morganii S2 |
8 | group_803 | EHELCC_06745 | 84230 | 85786 | 1 | ptsG2 | Phosphotransferase system IIB components | Morganella morganii S2 |
9 | group_198 | EHELCC_14490 | 118811 | 120256 | -1 | murP | PTS N-acetylmuramic acid transporter subunit IIBC | Morganella morganii S2 |
10 | group_82 | NLDBIP_00565 | 111614 | 113230 | 1 | malX | Phosphotransferase system IIB components | Morganella morganii S4 |
11 | group_328 | NLDBIP_04715 | 270278 | 272308 | -1 | nagE | Phosphotransferase system IIA component | Morganella morganii S4 |
12 | group_82 | NLDBIP_06400 | 260233 | 261804 | 1 | malX | Phosphotransferase system IIB components | Morganella morganii S4 |
13 | group_803 | NLDBIP_07070 | 84103 | 85659 | 1 | ptsG2 | Phosphotransferase system IIB components | Morganella morganii S4 |
14 | group_198 | NLDBIP_15585 | 122748 | 124193 | -1 | murP | PTS N-acetylmuramic acid transporter subunit IIBC | Morganella morganii S4 |
15 | group_82 | LHKJJB_01470 | 279455 | 281071 | -1 | malX | Phosphotransferase system IIB components | Morganella morganii S3 |
16 | group_82 | LHKJJB_03280 | 237757 | 239328 | 1 | malX | Phosphotransferase system IIB components | Morganella morganii S3 |
17 | group_803 | LHKJJB_06605 | 47849 | 49405 | 1 | ptsG2 | Phosphotransferase system IIB components | Morganella morganii S3 |
18 | group_328 | LHKJJB_13915 | 63070 | 65100 | 1 | nagE | Phosphotransferase system IIA component | Morganella morganii S3 |
19 | group_198 | LHKJJB_15025 | 14449 | 15894 | 1 | murP | PTS N-acetylmuramic acid transporter subunit IIBC | Morganella morganii S3 |
20 | group_82 | HKOGLL_01510 | 284966 | 286582 | -1 | malX | Phosphotransferase system IIB components | Morganella morganii S5 |
21 | group_803 | HKOGLL_04325 | 183982 | 185538 | -1 | ptsG2 | Phosphotransferase system IIB components | Morganella morganii S5 |
22 | group_82 | HKOGLL_06755 | 159621 | 161192 | 1 | malX | Phosphotransferase system IIB components | Morganella morganii S5 |
23 | group_328 | HKOGLL_12620 | 79298 | 81328 | -1 | nagE | Phosphotransferase system IIA component | Morganella morganii S5 |
24 | group_198 | HKOGLL_14145 | 1112 | 2557 | 1 | murP | PTS N-acetylmuramic acid transporter subunit IIBC | Morganella morganii S5 |
25 | group_328 | F4V73_RS00435 | 92047 | 94083 | 1 | nagE | N-acetylglucosamine-specific PTS transporter subunit IIBC | Morganella psychrotolerans |
26 | group_82 | F4V73_RS04800 | 1017910 | 1019532 | -1 | malX | maltose/glucose-specific PTS transporter subunit IIBC | Morganella psychrotolerans |
27 | group_82 | F4V73_RS09260 | 1939328 | 1940899 | 1 | malX | maltose/glucose-specific PTS transporter subunit IIBC | Morganella psychrotolerans |
28 | group_803 | F4V73_RS11080 | 353692 | 355248 | 1 | PTS transporter subunit EIIC | Morganella psychrotolerans | |
29 | group_198 | F4V73_RS14840 | 202303 | 203760 | -1 | murP | PTS N-acetylmuramic acid transporter subunit IIBC | Morganella psychrotolerans |
30 | group_198 | PMI_RS01405 | 347959 | 349380 | -1 | treB | PTS trehalose transporter subunit IIBC | Proteus mirabilis HI4320 |
31 | group_328 | PMI_RS02280 | 524804 | 526849 | 1 | nagE | N-acetylglucosamine-specific PTS transporter subunit IIBC | Proteus mirabilis HI4320 |
32 | group_198 | PMI_RS10970 | 2414701 | 2416590 | -1 | beta-glucoside-specific PTS transporter subunit IIABC | Proteus mirabilis HI4320 | |
33 | group_328 | PMI_RS11320 | 2492061 | 2493509 | -1 | ptsG | PTS glucose transporter subunit IIBC | Proteus mirabilis HI4320 |
34 | group_803 | PMI_RS14745 | 3271123 | 3272679 | -1 | PTS transporter subunit EIIC | Proteus mirabilis HI4320 | |
35 | group_198 | PMI_RS17475 | 3835253 | 3836617 | 1 | PTS transporter subunit EIIC | Proteus mirabilis HI4320 |