Orthogroup:group_406


Homologs in group_406

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16410 FBDBKF_16410 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08275 EHELCC_08275 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_08600 NLDBIP_08600 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05665 LHKJJB_05665 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_05250 HKOGLL_05250 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS02930 F4V73_RS02930 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS06165 PMI_RS06165 Proteus mirabilis HI4320 - XylR family transcriptional regulator
PMI_RS07795 PMI_RS07795 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of group_406 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_406 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_406

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_406.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 3

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 helix-turn-helix domain-containing protein 2
3 XylR family transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1609 1 K Transcription (K) DNA-binding transcriptional regulator, LacI/PurR family
COG2207 7 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K13631 7 AraC family transcriptional regulator, mar-sox-rob regulon activator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12833 8 Helix-turn-helix domain
PF13377 1 Periplasmic binding protein-like domain
PF22177 1 XylR N-terminal domain

Annotations of the 215 SwissProt hits

Annotation Number of occurrences
Anthranilate 1,2-dioxygenase regulatory protein 1
Arabinose metabolism transcriptional repressor 2
Arabinose operon regulatory protein 5
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
CFA/I fimbrial subunit D 1
Catabolite control protein A 1
F1 operon positive regulatory protein 1
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator RhaR 41
HTH-type transcriptional activator RhaS 57
HTH-type transcriptional regulator AdiY 1
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator AppY 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GadX 5
HTH-type transcriptional regulator GalR 1
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator GlxA 1
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator RegA 1
HTH-type transcriptional regulator RipA 2
HTH-type transcriptional regulator Rv1931c 1
HTH-type transcriptional regulator YdeO 4
HTH-type transcriptional regulator YesS 1
Histidine kinase P4 1
Lactose operon transcription activator 1
Melibiose operon regulatory protein 2
MmsAB operon regulatory protein 1
Msm operon regulatory protein 1
Multiple antibiotic resistance protein MarA 6
Probable HTH-type transcriptional regulator STM3175 1
Probable transcription factor PqrA 1
Putative AraC-like transcription regulator 2
Putative HTH-type transcriptional regulator YkgA 1
RCS-specific HTH-type transcriptional activator RclR 1
Raffinose operon transcriptional regulatory protein RafR 1
Regulatory protein PchR 1
Regulatory protein PocR 1
Regulatory protein Rns 1
Regulatory protein SoxS 4
Ribose operon repressor 3
Right origin-binding protein 3
Thermoregulatory protein LcrF 1
Transcriptional activator AggR 1
Transcriptional activator FeaR 1
Transcriptional activator NphR 1
Transcriptional activator PerA 1
Transcriptional activator RamA 2
Transcriptional activator RhrA 1
Transcriptional regulator HilD 2
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YbfP 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdeE 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YobQ 1
Uncharacterized HTH-type transcriptional regulator YpdC 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Uncharacterized HTH-type transcriptional regulator YtdP 1
Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) 1
Uncharacterized transcriptional regulatory protein YesN 1
Urease operon transcriptional activator 2
Virulence regulon transcriptional activator VirF 2
XylDLEGF operon transcriptional activator 1
XylDLEGF operon transcriptional activator 1 2
XylDLEGF operon transcriptional activator 2 1
XylDLEGF operon transcriptional activator 3 1
Xylose operon regulatory protein 4

Protein length

Min length 127
Max length 389
Mean length (sd) 159.9 (92.6)
Median length 127.0

Protein length distribution