Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K05804
Protein list: lists the 21 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.
KO part of 0 pathways
KO part of 0 modules
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_35 | FBDBKF_17200 | 22313 | 23212 | 1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S1 |
1 | group_35 | EHELCC_01690 | 332289 | 333188 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S2 |
2 | group_35 | NLDBIP_01770 | 346948 | 347847 | 1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S4 |
3 | group_35 | LHKJJB_00265 | 44838 | 45737 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S3 |
4 | group_35 | HKOGLL_00305 | 50349 | 51248 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S5 |
5 | group_400 | FBDBKF_06550 | 150409 | 151329 | 1 | robA | MDR efflux pump AcrAB transcriptional activator RobA | Morganella morganii S1 |
6 | group_400 | EHELCC_09595 | 150981 | 151901 | 1 | robA | MDR efflux pump AcrAB transcriptional activator RobA | Morganella morganii S2 |
7 | group_400 | NLDBIP_09975 | 150981 | 151901 | 1 | robA | MDR efflux pump AcrAB transcriptional activator RobA | Morganella morganii S4 |
8 | group_400 | LHKJJB_07780 | 65337 | 66257 | -1 | robA | MDR efflux pump AcrAB transcriptional activator RobA | Morganella morganii S3 |
9 | group_400 | HKOGLL_07330 | 65337 | 66257 | -1 | robA | MDR efflux pump AcrAB transcriptional activator RobA | Morganella morganii S5 |
10 | group_35 | FBDBKF_18175 | 654 | 1568 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S1 |
11 | group_35 | EHELCC_18210 | 527 | 1441 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S2 |
12 | group_35 | NLDBIP_18135 | 728 | 1642 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S4 |
13 | group_35 | LHKJJB_18330 | 566 | 1480 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S3 |
14 | group_35 | HKOGLL_18065 | 544 | 1458 | -1 | araC | AraC-type DNA-binding domain and AraC-containing proteins | Morganella morganii S5 |
15 | group_35 | F4V73_RS01695 | 372336 | 373250 | -1 | helix-turn-helix domain-containing protein | Morganella psychrotolerans | |
16 | group_35 | F4V73_RS05955 | 1266469 | 1267401 | 1 | AraC family transcriptional regulator | Morganella psychrotolerans | |
17 | group_400 | F4V73_RS15385 | 62093 | 63007 | -1 | robA | MDR efflux pump AcrAB transcriptional activator RobA | Morganella psychrotolerans |
18 | group_35 | PMI_RS03950 | 890400 | 891296 | -1 | AraC family transcriptional regulator | Proteus mirabilis HI4320 | |
19 | group_196 | PMI_RS19730 | 1237353 | 1238267 | -1 | helix-turn-helix domain-containing protein | Proteus mirabilis HI4320 | |
20 | group_400 | PMI_RS18495 | 4060644 | 4061546 | -1 | robA | MDR efflux pump AcrAB transcriptional activator RobA | Proteus mirabilis HI4320 |