COG2204


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2204, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 27 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG2204 is associated with 27 different proteins (see tab "Protein list" and "Profile")
The 27 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_534 FBDBKF_01185 220931 222271 -1 qseF two-component system response regulator QseF/GlrR Morganella morganii S1
1 group_1437 FBDBKF_09065 28763 30010 -1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S1
2 group_74 FBDBKF_10590 79116 80501 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S1
3 group_74 FBDBKF_12110 77057 78511 1 glnG nitrogen regulation protein NR(I) Morganella morganii S1
4 group_534 EHELCC_00360 86597 87937 1 qseF two-component system response regulator QseF/GlrR Morganella morganii S2
5 group_1437 EHELCC_10345 116094 117341 1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S2
6 group_74 EHELCC_14195 56194 57648 -1 glnG nitrogen regulation protein NR(I) Morganella morganii S2
7 group_74 EHELCC_14925 79106 80491 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S2
8 group_534 NLDBIP_03100 592199 593539 -1 qseF two-component system response regulator QseF/GlrR Morganella morganii S4
9 group_1437 NLDBIP_10690 94365 95612 1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S4
10 group_74 NLDBIP_14755 79106 80491 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S4
11 group_74 NLDBIP_15290 60131 61585 -1 glnG nitrogen regulation protein NR(I) Morganella morganii S4
12 group_534 LHKJJB_04615 199440 200780 -1 qseF two-component system response regulator QseF/GlrR Morganella morganii S3
13 group_1437 LHKJJB_10665 95916 97163 -1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S3
14 group_74 LHKJJB_14590 61235 62620 -1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S3
15 group_74 LHKJJB_15320 77057 78511 1 glnG nitrogen regulation protein NR(I) Morganella morganii S3
16 group_534 HKOGLL_02430 86802 88142 1 qseF two-component system response regulator QseF/GlrR Morganella morganii S5
17 group_74 HKOGLL_13210 61235 62620 -1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S5
18 group_1437 HKOGLL_13725 29217 30464 -1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S5
19 group_74 HKOGLL_14440 63720 65174 1 glnG nitrogen regulation protein NR(I) Morganella morganii S5
20 group_534 F4V73_RS07255 1509727 1511067 -1 glrR two-component system response regulator GlrR Morganella psychrotolerans
21 group_1437 F4V73_RS10880 314778 316028 1 sigma-54 dependent transcriptional regulator Morganella psychrotolerans
22 group_74 F4V73_RS14300 81667 83052 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella psychrotolerans
23 group_74 F4V73_RS14530 135619 137106 -1 glnG nitrogen regulation protein NR(I) Morganella psychrotolerans
24 group_534 PMI_RS09240 2013877 2015214 -1 glrR two-component system response regulator GlrR Proteus mirabilis HI4320
25 group_1437 PMI_RS11900 2627627 2628904 -1 sigma-54 dependent transcriptional regulator Proteus mirabilis HI4320
26 group_74 PMI_RS14255 3163007 3164428 1 glnG nitrogen regulation protein NR(I) Proteus mirabilis HI4320