COG0834


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0834, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 26 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type amino acid transport/signal transduction system, periplasmic component/domain
Function(s) descr. Amino acid transport and metabolism (E)
Signal transduction mechanisms (T)

Occurence in the database

COG0834 is associated with 26 different proteins (see tab "Protein list" and "Profile")
The 26 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3164 FBDBKF_00450 67728 68495 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S1
1 group_1208 FBDBKF_07015 66554 67288 -1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S1
2 group_1546 FBDBKF_10015 96430 97326 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S1
3 group_1638 FBDBKF_10805 129699 130532 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S1
4 group_3164 EHELCC_01095 240373 241140 -1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S2
5 group_1208 EHELCC_03955 118898 119632 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S2
6 group_1546 EHELCC_04815 288395 289291 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S2
7 group_1638 EHELCC_19395 485 1318 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S2
8 group_3164 NLDBIP_02365 438996 439763 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S4
9 group_1208 NLDBIP_03955 118694 119428 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S4
10 group_1546 NLDBIP_04815 288191 289087 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S4
11 group_1638 NLDBIP_14970 129689 130522 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S4
12 group_3164 LHKJJB_03880 46237 47004 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S3
13 group_1208 LHKJJB_09785 118808 119542 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S3
14 group_1546 LHKJJB_13815 46291 47187 -1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S3
15 group_1638 LHKJJB_14375 11204 12037 -1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S3
16 group_3164 HKOGLL_03165 240578 241345 -1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S5
17 group_1208 HKOGLL_09190 71510 72244 -1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S5
18 group_1546 HKOGLL_12720 97211 98107 1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S5
19 group_1638 HKOGLL_12995 11204 12037 -1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain Morganella morganii S5
20 group_1546 F4V73_RS00320 74430 75332 -1 glutamate/aspartate ABC transporter substrate-binding protein Morganella psychrotolerans
21 group_1208 F4V73_RS01205 254132 254866 -1 artJ arginine ABC transporter substrate-binding protein Morganella psychrotolerans
22 group_1638 F4V73_RS14490 127112 127945 1 ABC transporter substrate-binding protein Morganella psychrotolerans
23 group_1546 PMI_RS02155 504757 505650 -1 amino acid ABC transporter substrate-binding protein Proteus mirabilis HI4320
24 group_1208 PMI_RS03350 738962 739696 -1 artJ arginine ABC transporter substrate-binding protein Proteus mirabilis HI4320
25 group_1638 PMI_RS14325 3179003 3179842 1 ABC transporter substrate-binding protein Proteus mirabilis HI4320