Orthogroup:group_1680


Homologs in group_1680

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10805 FBDBKF_10805 Morganella morganii S1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
EHELCC_19395 EHELCC_19395 Morganella morganii S2 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
NLDBIP_14970 NLDBIP_14970 Morganella morganii S4 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
LHKJJB_14375 LHKJJB_14375 Morganella morganii S3 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
HKOGLL_12995 HKOGLL_12995 Morganella morganii S5 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
F4V73_RS14490 F4V73_RS14490 Morganella psychrotolerans - ABC transporter substrate-binding protein
PMI_RS14325 PMI_RS14325 Proteus mirabilis HI4320 - ABC transporter substrate-binding protein

Distribution of group_1680 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1680 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1680

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1680.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hisJ 5
2 - 2

Product

# Product Occurence
1 ABC-type amino acid transport/signal transduction system, periplasmic component/domain 5
2 ABC transporter substrate-binding protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0834 7 ET Amino acid transport and metabolism (E)
Signal transduction mechanisms (T)		 ABC-type amino acid transport/signal transduction system, periplasmic component/domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02030 7 polar amino acid transport system substrate-binding protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00497 7 Bacterial extracellular solute-binding proteins, family 3

Annotations of the 97 SwissProt hits

Annotation Number of occurrences
ABC transporter D-alanine-binding periplasmic protein 1
ABC transporter arginine-binding protein 1
ABC transporter arginine-binding protein 1 1
ABC transporter glutamine-binding protein GlnH 1
Amino-acid-binding protein AabA 1
Arginine-binding extracellular protein ArtP 1
Arginine-binding periplasmic protein 1
Cyclohexadienyl dehydratase 1
General L-amino acid-binding periplasmic protein AapJ 1
Glutamate receptor 1 1
Glutamate-binding protein GluB 2
Glutamate/aspartate import solute-binding protein 2
Glutamine-binding periplasmic protein 3
Glutamine-binding protein 1
Histidine-binding periplasmic protein 4
L-arginine-binding protein 1
L-cystine-binding protein TcyA 1
L-cystine-binding protein TcyJ 2
L-glutamate/L-aspartate-binding protein 1
Lysine/arginine/ornithine-binding periplasmic protein 2
Major cell-binding factor 2
Membrane-bound lytic murein transglycosylase F 47
Nopaline-binding periplasmic protein 1
Octopine-binding periplasmic protein 3
Probable ABC transporter arginine-binding protein ArtJ 2
Probable ABC transporter extracellular-binding protein YckB 1
Probable amino-acid ABC transporter periplasmic-binding protein y4tE 1
Probable amino-acid ABC transporter-binding protein HI_1080 1
Probable amino-acid-binding protein YxeM 1
Probable histidine-binding protein 2
Putative ABC transporter arginine-binding protein 2 1
Putative amino-acid ABC transporter-binding protein PatH 1
Putative amino-acid ABC transporter-binding protein YhdW 2
Virulence sensor protein BvgS 3

Protein length

Min length 277
Max length 279
Mean length (sd) 277.3 (0.8)
Median length 277.0

Protein length distribution