COG0747


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0747, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 34 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type transport system, periplasmic component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0747 is associated with 34 different proteins (see tab "Protein list" and "Profile")
The 34 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_963 FBDBKF_05305 67802 69370 1 ddpA ABC-type transport system, periplasmic component Morganella morganii S1
1 group_1006 FBDBKF_05620 130975 132663 1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S1
2 group_1166 FBDBKF_06690 176814 178409 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S1
3 group_2790 FBDBKF_08940 5110 6684 -1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S1
4 group_1718 FBDBKF_11990 46588 48204 -1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S1
5 group_1166 EHELCC_09735 177386 178981 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S2
6 group_2790 EHELCC_10470 139420 140994 1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S2
7 group_1006 EHELCC_11970 48831 50519 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S2
8 group_963 EHELCC_12285 112124 113692 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S2
9 group_1718 EHELCC_14315 86501 88117 1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S2
10 group_1166 NLDBIP_10115 177386 178981 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S4
11 group_2790 NLDBIP_10815 117691 119265 1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S4
12 group_1006 NLDBIP_12310 48786 50474 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S4
13 group_963 NLDBIP_12625 112079 113647 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S4
14 group_1718 NLDBIP_15410 90438 92054 1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S4
15 group_1166 LHKJJB_07640 38257 39852 1 ddpA ABC-type transport system, periplasmic component Morganella morganii S3
16 group_2790 LHKJJB_10540 72263 73837 -1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S3
17 group_1006 LHKJJB_12170 48831 50519 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S3
18 group_963 LHKJJB_12485 112124 113692 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S3
19 group_1718 LHKJJB_15200 46588 48204 -1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S3
20 group_1166 HKOGLL_07190 38257 39852 1 ddpA ABC-type transport system, periplasmic component Morganella morganii S5
21 group_1006 HKOGLL_10785 48831 50519 -1 sapA ABC transporter substrate-binding protein SapA Morganella morganii S5
22 group_963 HKOGLL_11100 112124 113692 -1 ddpA ABC-type transport system, periplasmic component Morganella morganii S5
23 group_2790 HKOGLL_13600 5564 7138 -1 nikA nickel ABC transporter substrate-binding protein Morganella morganii S5
24 group_1718 HKOGLL_14320 33251 34867 -1 dppA dipeptide ABC transporter periplasmic-binding protein DppA Morganella morganii S5
25 group_1006 F4V73_RS03685 782296 784005 -1 sapA ABC transporter substrate-binding protein SapA Morganella psychrotolerans
26 group_963 F4V73_RS05760 1224560 1226128 1 ABC transporter substrate-binding protein Morganella psychrotolerans
27 group_1718 F4V73_RS14665 168180 169793 1 dipeptide ABC transporter periplasmic-binding protein DppA Morganella psychrotolerans
28 group_1166 F4V73_RS15250 35841 37436 1 ABC transporter substrate-binding protein Morganella psychrotolerans
29 group_1006 PMI_RS06655 1455927 1457618 1 sapA ABC transporter substrate-binding protein SapA Proteus mirabilis HI4320
30 group_963 PMI_RS07165 1567449 1569014 1 ABC transporter substrate-binding protein Proteus mirabilis HI4320
31 group_1166 PMI_RS12440 2758158 2759741 -1 ABC transporter substrate-binding protein Proteus mirabilis HI4320
32 group_1718 PMI_RS14065 3122524 3124131 -1 ABC transporter substrate-binding protein Proteus mirabilis HI4320
33 group_2790 PMI_RS14570 3229951 3231528 -1 nikA nickel ABC transporter substrate-binding protein Proteus mirabilis HI4320