COG0642


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0642, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 52 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Signal transduction histidine kinase
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG0642 is associated with 52 different proteins (see tab "Protein list" and "Profile")
The 52 proteins are classified into 8 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_432 FBDBKF_00375 47826 50540 1 rcsD phosphotransferase RcsD Morganella morganii S1
1 group_434 FBDBKF_00385 51253 54099 -1 rcsC two-component system sensor histidine kinase RcsC Morganella morganii S1
2 group_646 FBDBKF_02145 118401 119777 1 kdpD K+-sensing histidine kinase KdpD Morganella morganii S1
3 group_713 FBDBKF_03095 17386 19719 -1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S1
4 group_2685 FBDBKF_05210 48693 50039 1 qseC quorum sensing histidine kinase QseC Morganella morganii S1
5 group_1632 FBDBKF_10745 116808 118142 1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S1
6 group_1944 FBDBKF_14580 10320 11789 1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S1
7 group_2238 FBDBKF_17140 12884 14302 1 baeS Signal transduction histidine kinase Morganella morganii S1
8 group_434 EHELCC_01160 254769 257615 1 rcsC two-component system sensor histidine kinase RcsC Morganella morganii S2
9 group_432 EHELCC_01170 258328 261042 -1 rcsD phosphotransferase RcsD Morganella morganii S2
10 group_2238 EHELCC_01750 341199 342617 -1 baeS Signal transduction histidine kinase Morganella morganii S2
11 group_646 EHELCC_02615 506221 507597 1 kdpD K+-sensing histidine kinase KdpD Morganella morganii S2
12 group_713 EHELCC_07440 227384 229717 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S2
13 group_2685 EHELCC_12380 131455 132801 -1 qseC quorum sensing histidine kinase QseC Morganella morganii S2
14 group_1632 EHELCC_15080 116798 118132 1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S2
15 group_1944 EHELCC_15385 40396 41865 1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S2
16 group_646 NLDBIP_00845 172539 173915 -1 kdpD K+-sensing histidine kinase KdpD Morganella morganii S4
17 group_2238 NLDBIP_01710 337519 338937 1 baeS Signal transduction histidine kinase Morganella morganii S4
18 group_432 NLDBIP_02290 419094 421808 1 rcsD phosphotransferase RcsD Morganella morganii S4
19 group_434 NLDBIP_02300 422521 425367 -1 rcsC two-component system sensor histidine kinase RcsC Morganella morganii S4
20 group_713 NLDBIP_07765 227257 229590 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S4
21 group_2685 NLDBIP_12720 131410 132756 -1 qseC quorum sensing histidine kinase QseC Morganella morganii S4
22 group_1632 NLDBIP_14910 116798 118132 1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S4
23 group_1944 NLDBIP_15915 40396 41865 1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S4
24 group_2238 LHKJJB_00325 53748 55166 -1 baeS Signal transduction histidine kinase Morganella morganii S3
25 group_646 LHKJJB_01190 218770 220146 1 kdpD K+-sensing histidine kinase KdpD Morganella morganii S3
26 group_432 LHKJJB_03805 26335 29049 1 rcsD phosphotransferase RcsD Morganella morganii S3
27 group_434 LHKJJB_03815 29762 32608 -1 rcsC two-component system sensor histidine kinase RcsC Morganella morganii S3
28 group_713 LHKJJB_07300 191003 193336 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S3
29 group_2685 LHKJJB_12580 131455 132801 -1 qseC quorum sensing histidine kinase QseC Morganella morganii S3
30 group_1632 LHKJJB_14435 23594 24928 -1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S3
31 group_1944 LHKJJB_15925 74821 76290 -1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S3
32 group_2238 HKOGLL_00365 59259 60677 -1 baeS Signal transduction histidine kinase Morganella morganii S5
33 group_646 HKOGLL_01230 224281 225657 1 kdpD K+-sensing histidine kinase KdpD Morganella morganii S5
34 group_434 HKOGLL_03230 254974 257820 1 rcsC two-component system sensor histidine kinase RcsC Morganella morganii S5
35 group_432 HKOGLL_03240 258533 261247 -1 rcsD phosphotransferase RcsD Morganella morganii S5
36 group_713 HKOGLL_03630 40051 42384 -1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S5
37 group_2685 HKOGLL_11195 131455 132801 -1 qseC quorum sensing histidine kinase QseC Morganella morganii S5
38 group_1632 HKOGLL_13055 23594 24928 -1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S5
39 group_1944 HKOGLL_15045 74033 75502 -1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S5
40 group_646 F4V73_RS04495 950883 952220 1 ATP-binding protein Morganella psychrotolerans
41 group_2685 F4V73_RS05670 1205006 1206352 1 qseC quorum sensing histidine kinase QseC Morganella psychrotolerans
42 group_2238 F4V73_RS05900 1257433 1258818 1 ATP-binding protein Morganella psychrotolerans
43 group_434 F4V73_RS06365 1323441 1326290 -1 rcsC two-component system sensor histidine kinase RcsC Morganella psychrotolerans
44 group_1944 F4V73_RS07375 1538552 1540018 1 phoQ two-component system sensor histidine kinase PhoQ Morganella psychrotolerans
45 group_713 F4V73_RS11825 519430 521763 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella psychrotolerans
46 group_1632 F4V73_RS14460 120601 121935 1 envZ two-component system sensor histidine kinase EnvZ Morganella psychrotolerans
47 group_1944 PMI_RS04345 976188 977651 -1 phoQ two-component system sensor histidine kinase PhoQ Proteus mirabilis HI4320
48 group_2238 PMI_RS08305 1814082 1815485 1 ATP-binding protein Proteus mirabilis HI4320
49 group_434 PMI_RS08495 1848619 1851447 -1 rcsC two-component system sensor histidine kinase RcsC Proteus mirabilis HI4320
50 group_1632 PMI_RS14295 3172721 3174061 1 envZ two-component system sensor histidine kinase EnvZ Proteus mirabilis HI4320
51 group_713 PMI_RS18300 4018571 4020907 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Proteus mirabilis HI4320