COG0451
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0451, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 29 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Nucleoside-diphosphate-sugar epimerase |
---|---|
Function(s) descr. | Cell wall/membrane/envelope biogenesis (M) |
Occurence in the database
COG0451 is associated with 29 different proteins (see tab "Protein list" and "Profile") |
The 29 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_271 | FBDBKF_05350 | 78768 | 79781 | -1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S1 |
1 | group_1200 | FBDBKF_06940 | 52085 | 52912 | 1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S1 |
2 | group_404 | FBDBKF_16315 | 50805 | 51743 | -1 | rfaD | ADP-glyceromanno-heptose 6-epimerase | Morganella morganii S1 |
3 | group_2175 | FBDBKF_16360 | 59123 | 60073 | -1 | UDP-glucose 4-epimerase | Morganella morganii S1 | |
4 | group_1200 | EHELCC_04030 | 133274 | 134101 | -1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S2 |
5 | group_271 | EHELCC_12240 | 101713 | 102726 | 1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S2 |
6 | group_404 | EHELCC_16350 | 50805 | 51743 | -1 | rfaD | ADP-glyceromanno-heptose 6-epimerase | Morganella morganii S2 |
7 | group_2175 | EHELCC_16395 | 59123 | 60073 | -1 | UDP-glucose 4-epimerase | Morganella morganii S2 | |
8 | group_1200 | NLDBIP_04030 | 133070 | 133897 | -1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S4 |
9 | group_271 | NLDBIP_12580 | 101668 | 102681 | 1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S4 |
10 | group_2175 | NLDBIP_16945 | 2097 | 3047 | 1 | UDP-glucose 4-epimerase | Morganella morganii S4 | |
11 | group_404 | NLDBIP_16990 | 10427 | 11365 | 1 | rfaD | ADP-glyceromanno-heptose 6-epimerase | Morganella morganii S4 |
12 | group_1200 | LHKJJB_09860 | 133184 | 134011 | -1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S3 |
13 | group_271 | LHKJJB_12440 | 101713 | 102726 | 1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S3 |
14 | group_2175 | LHKJJB_16865 | 5199 | 6149 | 1 | UDP-glucose 4-epimerase | Morganella morganii S3 | |
15 | group_404 | LHKJJB_16910 | 13529 | 14467 | 1 | rfaD | ADP-glyceromanno-heptose 6-epimerase | Morganella morganii S3 |
16 | group_1200 | HKOGLL_09115 | 57041 | 57868 | 1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S5 |
17 | group_271 | HKOGLL_11055 | 101713 | 102726 | 1 | wcaG | Nucleoside-diphosphate-sugar epimerase | Morganella morganii S5 |
18 | group_404 | HKOGLL_16930 | 50805 | 51743 | -1 | rfaD | ADP-glyceromanno-heptose 6-epimerase | Morganella morganii S5 |
19 | group_2175 | HKOGLL_16975 | 59123 | 60073 | -1 | UDP-glucose 4-epimerase | Morganella morganii S5 | |
20 | group_1200 | F4V73_RS01125 | 236991 | 237818 | 1 | SDR family oxidoreductase | Morganella psychrotolerans | |
21 | group_271 | F4V73_RS05805 | 1235674 | 1236690 | -1 | NAD-dependent epimerase | Morganella psychrotolerans | |
22 | group_2175 | F4V73_RS16250 | 61182 | 62186 | -1 | NAD(P)-dependent oxidoreductase | Morganella psychrotolerans | |
23 | group_2175 | F4V73_RS17215 | 74863 | 75813 | 1 | NAD-dependent epimerase/dehydratase family protein | Morganella psychrotolerans | |
24 | group_404 | F4V73_RS17275 | 87549 | 88487 | 1 | rfaD | ADP-glyceromanno-heptose 6-epimerase | Morganella psychrotolerans |
25 | group_1200 | PMI_RS03280 | 724671 | 725492 | 1 | SDR family oxidoreductase | Proteus mirabilis HI4320 | |
26 | group_271 | PMI_RS07210 | 1579323 | 1580330 | -1 | NAD-dependent epimerase | Proteus mirabilis HI4320 | |
27 | group_404 | PMI_RS15705 | 3488695 | 3489633 | -1 | rfaD | ADP-glyceromanno-heptose 6-epimerase | Proteus mirabilis HI4320 |
28 | group_271 | PMI_RS15765 | 3500964 | 3501974 | -1 | NAD-dependent epimerase | Proteus mirabilis HI4320 |