Orthogroup:group_258


Homologs in group_258

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04260 FBDBKF_04260 Morganella morganii S1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
EHELCC_05550 EHELCC_05550 Morganella morganii S2 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
NLDBIP_05870 NLDBIP_05870 Morganella morganii S4 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
LHKJJB_02750 LHKJJB_02750 Morganella morganii S3 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
HKOGLL_06225 HKOGLL_06225 Morganella morganii S5 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
F4V73_RS08705 F4V73_RS08705 Morganella psychrotolerans - ATPase, T2SS/T4P/T4SS family
PMI_RS10105 PMI_RS10105 Proteus mirabilis HI4320 - ATPase, T2SS/T4P/T4SS family
PMI_RS18590 PMI_RS18590 Proteus mirabilis HI4320 virB11 P-type DNA transfer ATPase VirB11

Distribution of group_258 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_258 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_258

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_258.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pulE 5
2 - 2
3 virB11 1

Product

# Product Occurence
1 Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB 5
2 ATPase, T2SS/T4P/T4SS family 2
3 P-type DNA transfer ATPase VirB11 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2804 7 NUW Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
COG4962 1 UW Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 Pilus assembly protein, ATPase of CpaF family

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00437 8 Type II/IV secretion system protein

Annotations of the 48 SwissProt hits

Annotation Number of occurrences
Archaeal flagellar ATPase motor FlaI 1
Competence protein ComGA 3
Conjugal transfer protein TrbB 1
Probable conjugal transfer protein TrbB 1
Protein VirB11 3
Protein transport protein HofB homolog 2
Putative conjugal transfer protein MT3759 1
Putative conjugal transfer protein Rv3659c 1
Putative type II secretion system protein E 1
Toxin coregulated pilus biosynthesis protein T 1
Twitching motility protein 1
Type II secretion system ATPase E 1
Type II secretion system protein E 7
Type II secretion system protein HxcR 1
Type IV pilus ATPase PilU 1
Type IV pilus assembly ATPase PilB 4
Type IV pilus assembly ATPase TfpB 1
Type IV pilus assembly protein PilF 1
Type IV pilus assembly protein TapB 1
Type IV pilus retractation ATPase PilT 1
Type IV secretion system protein PtlH 1
Type IV secretion system protein PtlH homolog 2
Type IV secretion system protein VirB11 6
Uncharacterized protein MJ0781 1
Uncharacterized protein MJ0900 1
Uncharacterized protein MJ1287 1
Uncharacterized protein YggR 1
Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 1

Protein length

Min length 344
Max length 523
Mean length (sd) 471.1 (71.8)
Median length 507.0

Protein length distribution