Orthogroup:group_197


Homologs in group_197

Help

9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_11805 FBDBKF_11805 Morganella morganii S1 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
EHELCC_14500 EHELCC_14500 Morganella morganii S2 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
NLDBIP_15595 NLDBIP_15595 Morganella morganii S4 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
LHKJJB_15015 LHKJJB_15015 Morganella morganii S3 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
HKOGLL_19270 HKOGLL_19270 Morganella morganii S5 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
F4V73_RS14850 F4V73_RS14850 Morganella psychrotolerans - SIS domain-containing protein
PMI_RS10455 PMI_RS10455 Proteus mirabilis HI4320 - MurR/RpiR family transcriptional regulator
PMI_RS13900 PMI_RS13900 Proteus mirabilis HI4320 - SIS domain-containing protein
PMI_RS17480 PMI_RS17480 Proteus mirabilis HI4320 - MurR/RpiR family transcriptional regulator

Distribution of group_197 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_197 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_197

Orthogroup content: 9 members

Help

This page summarizes the annotation of all members of the orthologous group group_197.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpiR 5
2 - 4

Product

# Product Occurence
1 DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains 5
2 SIS domain-containing protein 2
3 MurR/RpiR family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1737 9 K Transcription (K) DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15835 7 RpiR family transcriptional regulator, murPQ operon repressor - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01380 9 SIS domain
PF01418 9 Helix-turn-helix domain, rpiR family

Annotations of the 86 SwissProt hits

Annotation Number of occurrences
3-hexulose-6-phosphate isomerase 3
Arabinose 5-phosphate isomerase GutQ 6
Arabinose 5-phosphate isomerase KdsD 8
Arabinose 5-phosphate isomerase KpsF 3
Bifunctional protein glk 7
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 5
HTH-type transcriptional regulator GlvR 1
HTH-type transcriptional regulator HexR 3
HTH-type transcriptional regulator MurR 26
HTH-type transcriptional regulator RpiR 2
N-acetylmuramic acid 6-phosphate etherase 5
Probable arabinose 5-phosphate isomerase 1
Uncharacterized HTH-type transcriptional regulator CA_C0191 1
Uncharacterized HTH-type transcriptional regulator CPE0189 1
Uncharacterized HTH-type transcriptional regulator HI_0143 1
Uncharacterized HTH-type transcriptional regulator TM_0326 1
Uncharacterized HTH-type transcriptional regulator TTE0211 1
Uncharacterized HTH-type transcriptional regulator YbbH 1
Uncharacterized HTH-type transcriptional regulator YfhH 1
Uncharacterized HTH-type transcriptional regulator in aarA 3'region 1
Uncharacterized phosphosugar isomerase aq_1546 1
Uncharacterized protein AF_1796 1
Uncharacterized protein APE_1940.1 1
Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 1
Uncharacterized protein CT_399 1
Uncharacterized protein MTH_249 1
Uncharacterized protein RP505 1
Uncharacterized protein TC_0679 1

Protein length

Min length 274
Max length 286
Mean length (sd) 284.3 (4.0)
Median length 286.0

Protein length distribution