VFG042679


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Virulence factors VFG042679, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Virulence factors within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Virulence factor(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Virulence factors has been clustered.
In red the Virulence factors with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Virulence factors prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Virulence factors.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Virulence factors prediction.

Description

Protein major fimbrial subunit
VF ID VF1211
Category Adherence
Protein ID CAD56970
Vf_category_id VFC0001

Occurence in the database

VFG042679 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_78 FBDBKF_20065 13187 13732 -1 fimA type 1 fimbrial major subunit FimA Morganella morganii S1
1 group_78 EHELCC_03465 1088 1633 1 fimA type 1 fimbrial major subunit FimA Morganella morganii S2
2 group_78 NLDBIP_03465 884 1429 1 fimA type 1 fimbrial major subunit FimA Morganella morganii S4
3 group_78 LHKJJB_09295 998 1543 1 fimA type 1 fimbrial major subunit FimA Morganella morganii S3
4 group_78 HKOGLL_09680 189509 190054 -1 fimA type 1 fimbrial major subunit FimA Morganella morganii S5