Homologs in group_41

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01635 FBDBKF_01635 83.7 Morganella morganii S1 sdaA L-serine ammonia-lyase
FBDBKF_06960 FBDBKF_06960 74.0 Morganella morganii S1 sdaA L-serine ammonia-lyase
EHELCC_02105 EHELCC_02105 83.7 Morganella morganii S2 sdaA L-serine ammonia-lyase
EHELCC_04010 EHELCC_04010 74.0 Morganella morganii S2 sdaA L-serine ammonia-lyase
NLDBIP_01355 NLDBIP_01355 83.7 Morganella morganii S4 sdaA L-serine ammonia-lyase
NLDBIP_04010 NLDBIP_04010 74.0 Morganella morganii S4 sdaA L-serine ammonia-lyase
LHKJJB_00680 LHKJJB_00680 83.7 Morganella morganii S3 sdaA L-serine ammonia-lyase
LHKJJB_09840 LHKJJB_09840 74.0 Morganella morganii S3 sdaA L-serine ammonia-lyase
HKOGLL_00720 HKOGLL_00720 83.7 Morganella morganii S5 sdaA L-serine ammonia-lyase
HKOGLL_09135 HKOGLL_09135 74.0 Morganella morganii S5 sdaA L-serine ammonia-lyase
F4V73_RS01155 F4V73_RS01155 73.7 Morganella psychrotolerans - L-serine ammonia-lyase
F4V73_RS03975 F4V73_RS03975 83.2 Morganella psychrotolerans - L-serine ammonia-lyase
PMI_RS03300 PMI_RS03300 72.8 Proteus mirabilis HI4320 - L-serine ammonia-lyase

Distribution of the homologs in the orthogroup group_41

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_41

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P16095 0.0 758 80 1 454 1 sdaA L-serine dehydratase 1 Escherichia coli (strain K12)
P30744 0.0 703 75 4 457 2 sdaB L-serine dehydratase 2 Escherichia coli (strain K12)
P71349 0.0 669 70 2 455 3 sdaA L-serine dehydratase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42630 0.0 644 70 1 453 1 tdcG L-serine dehydratase TdcG Escherichia coli (strain K12)
O86564 3.54e-164 473 52 6 457 3 sdaA L-serine dehydratase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P56072 1.46e-132 393 44 6 456 3 sdaA L-serine dehydratase Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMU7 2.43e-132 392 44 7 458 3 sdaA L-serine dehydratase Helicobacter pylori (strain J99 / ATCC 700824)
P9WGT5 5.96e-127 379 49 5 454 1 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGT4 5.96e-127 379 49 5 454 3 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66774 5.96e-127 379 49 5 454 3 sdaA L-serine dehydratase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O34607 1.58e-41 152 38 8 282 3 sdaAA Probable L-serine dehydratase, alpha chain Bacillus subtilis (strain 168)
P33073 2.17e-28 117 35 8 281 1 sdhA L-serine dehydratase, alpha chain Peptoniphilus asaccharolyticus
Q48838 1.06e-25 107 38 2 181 3 sdhA Probable L-serine dehydratase, alpha chain (Fragment) Latilactobacillus sakei
O34635 2.08e-06 52 35 9 152 3 sdaAB Probable L-serine dehydratase, beta chain Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07845
Feature type CDS
Gene -
Product L-serine ammonia-lyase
Location 1717135 - 1718496 (strand: 1)
Length 1362 (nucleotides) / 453 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_41
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF03313 Serine dehydratase alpha chain
PF03315 Serine dehydratase beta chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1760 Amino acid transport and metabolism (E) E L-serine deaminase

Kegg Ortholog Annotation(s)

Protein Sequence

MISVFDMFKVGIGPSSSHTVGPMKAGKEFVDDLVSQDLIASVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNAPATVDIDSIPGFIREVEETGRLPLANGLKVVDFPAESMHFSNDNLSLHENGMTIHAFAGDKEIYRKTYYSIGGGFIVDEENFGKSVLDSQPVSYPYASAEELLKHCKETGLSISSLMMKNELDLHTQAEISAYFADVYKTMQECIEHGLNTEGVLPGPLRVPRRAASLNRLLTSSNSLSNDPMKVVDLINMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDRCIEKVTPEIYTRYFLASGAIGILYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD

Flanking regions ( +/- flanking 50bp)

ACTATATTTTTATTATTTTTTTAACCCTCACTCTTATTAAGGAGTCTGACGTGATTAGCGTTTTCGACATGTTTAAAGTGGGCATTGGGCCATCTAGCTCTCACACCGTAGGCCCCATGAAAGCGGGGAAAGAATTTGTCGATGATTTAGTCAGCCAGGATCTGATTGCGTCTGTCACTCGCGTAGCTGTTGATGTATACGGCTCATTGTCATTGACAGGCAAAGGTCACCACACTGATATCGCAATTATTATGGGCTTAGCAGGTAATGCACCCGCTACTGTCGATATTGACAGCATTCCCGGTTTTATTCGTGAAGTTGAAGAAACTGGCCGTTTACCATTAGCAAATGGATTAAAAGTTGTCGATTTTCCAGCTGAAAGTATGCATTTTAGCAATGATAATCTTTCATTACATGAAAATGGCATGACAATTCATGCTTTTGCAGGTGACAAAGAAATTTATCGTAAAACCTACTACTCTATTGGTGGTGGATTTATTGTTGATGAAGAAAACTTCGGCAAATCTGTGCTTGACAGCCAACCTGTTTCTTATCCGTATGCAAGCGCTGAAGAGTTATTAAAACATTGTAAAGAAACCGGATTATCAATCTCTAGCTTAATGATGAAAAATGAGCTAGATCTTCATACTCAAGCCGAAATTAGTGCCTATTTTGCTGATGTTTATAAAACCATGCAAGAGTGTATCGAGCATGGTTTAAATACCGAAGGCGTATTACCGGGACCACTTCGTGTTCCTCGTCGTGCTGCGTCACTAAATCGTTTATTAACTTCCAGTAATAGCCTGTCAAACGATCCGATGAAAGTCGTTGATCTTATCAATATGTTTGCACTGGCAGTGAATGAAGAAAATGCCGCAGGTGGACGAGTGGTCACCGCACCAACTAATGGCGCATGTGGTATTGTTCCAGCTGTATTGGCTTATTACGATCGCTGTATTGAAAAGGTCACGCCTGAAATTTATACCCGTTATTTCTTAGCCTCAGGAGCGATTGGTATTCTTTACAAAATGAATGCTTCTATTTCTGGCGCTGAAGTAGGTTGCCAAGGCGAAGTGGGCGTTGCTTGCTCAATGGCTGCCGCAGGACTTGCTGAATTACTCGGTGCTAGCCCTGAACAAGTCTGTGTTGCTGCTGAAATCGGTATGGAGCATAACTTAGGTTTAACTTGCGATCCTGTTGCAGGACAAGTACAAGTTCCTTGTATTGAACGTAATGCAATTGCCTCTGTTAAAGCGGTAAATGCTGCTCGTATGGCATTACGTCGTACCAGTGAACCACGAGTTTCACTTGATAAAGTGATTGAAACTATGTACGAAACAGGTAAAGACATGAACGCAAAATATCGCGAAACCTCTCGTGGTGGATTAGCAATAAAAGTTCAATGTGACTAATTAGCCTGATTTTATTTCTAAAGTCCATTTATAATAAATGGACTTTTTTT