Homologs in group_446

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06960 FBDBKF_06960 84.1 Morganella morganii S1 sdaA L-serine ammonia-lyase
EHELCC_04010 EHELCC_04010 84.1 Morganella morganii S2 sdaA L-serine ammonia-lyase
NLDBIP_04010 NLDBIP_04010 84.1 Morganella morganii S4 sdaA L-serine ammonia-lyase
LHKJJB_09840 LHKJJB_09840 84.1 Morganella morganii S3 sdaA L-serine ammonia-lyase
HKOGLL_09135 HKOGLL_09135 84.1 Morganella morganii S5 sdaA L-serine ammonia-lyase
F4V73_RS01155 F4V73_RS01155 82.8 Morganella psychrotolerans - L-serine ammonia-lyase

Distribution of the homologs in the orthogroup group_446

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_446

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30744 0.0 755 79 1 455 2 sdaB L-serine dehydratase 2 Escherichia coli (strain K12)
P16095 0.0 729 75 0 454 1 sdaA L-serine dehydratase 1 Escherichia coli (strain K12)
P42630 0.0 679 71 0 453 1 tdcG L-serine dehydratase TdcG Escherichia coli (strain K12)
P71349 0.0 645 66 1 455 3 sdaA L-serine dehydratase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O86564 8.37e-168 483 54 6 455 3 sdaA L-serine dehydratase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P9WGT5 1.42e-130 388 48 6 458 1 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGT4 1.42e-130 388 48 6 458 3 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66774 1.42e-130 388 48 6 458 3 sdaA L-serine dehydratase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9ZMU7 1.54e-127 380 43 8 456 3 sdaA L-serine dehydratase Helicobacter pylori (strain J99 / ATCC 700824)
P56072 4.7e-125 374 42 7 456 3 sdaA L-serine dehydratase Helicobacter pylori (strain ATCC 700392 / 26695)
O34607 3.47e-41 151 36 7 283 3 sdaAA Probable L-serine dehydratase, alpha chain Bacillus subtilis (strain 168)
P33073 1.46e-29 120 35 7 276 1 sdhA L-serine dehydratase, alpha chain Peptoniphilus asaccharolyticus
Q48838 2.67e-28 114 42 2 181 3 sdhA Probable L-serine dehydratase, alpha chain (Fragment) Latilactobacillus sakei
O34635 8.84e-09 59 35 8 152 3 sdaAB Probable L-serine dehydratase, beta chain Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03300
Feature type CDS
Gene -
Product L-serine ammonia-lyase
Location 729577 - 730941 (strand: -1)
Length 1365 (nucleotides) / 454 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_446
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03313 Serine dehydratase alpha chain
PF03315 Serine dehydratase beta chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1760 Amino acid transport and metabolism (E) E L-serine deaminase

Kegg Ortholog Annotation(s)

Protein Sequence

MVSVFDIFKIGIGPSSSHTVGPMKAGKEFVDLLAEKNLLSSVSRVVVDVYGSLSLTGKGHATDIAIIMGLAGNLPDTVDIDAIAPFIKQVENTGRLMLANGAQEVDFPAVGGMNFHKSNLPLHENGMTISAYNGEQLLLKKTYYSIGGGFIVDEEHFGQPEENKVEVPYPYQYAADLRRHCKETGLSLSALVMQNELALRSKEEISAHFAAVWEVMKSGIERGVNTEGLLPGPLRVPRRASALRRMLVTEDKTTTDPMTVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLSYYDKFIRPVNENSYTRFFLVAGVIGSLYKMNASISGAEVGCQGEVGVACSMAAGALTELLGGSPEQVCIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVQAVNSARMALRRVSDPRICLDKVIETMYETGKDINSKYRETSQGGLAIKVSCD

Flanking regions ( +/- flanking 50bp)

TTTCATTCTAATAACACACAGTGCGCCTTTAAATTAGGGAGGCGAATATTATGGTTAGCGTTTTTGATATTTTTAAAATCGGTATTGGACCTTCAAGCTCACACACGGTAGGCCCAATGAAAGCAGGTAAAGAATTTGTCGATTTACTTGCTGAGAAAAACCTTCTCTCCTCTGTTTCCCGCGTAGTCGTTGATGTGTATGGCTCTTTATCTCTAACAGGTAAAGGTCACGCAACAGACATCGCGATTATTATGGGATTAGCCGGTAATTTACCTGATACGGTTGATATTGACGCTATCGCACCTTTTATTAAACAAGTCGAAAATACCGGACGTTTGATGTTAGCTAATGGTGCTCAAGAGGTTGATTTCCCCGCGGTTGGAGGCATGAATTTTCATAAAAGTAATTTACCTCTTCATGAAAATGGTATGACTATCAGCGCCTATAATGGCGAACAACTTCTGTTGAAAAAAACCTATTACTCCATTGGTGGCGGCTTTATTGTTGATGAAGAGCATTTTGGTCAGCCCGAAGAGAATAAAGTTGAAGTACCTTATCCTTATCAATATGCTGCTGATTTACGACGTCACTGTAAGGAAACCGGTCTCTCTCTTTCTGCACTGGTGATGCAAAATGAGCTTGCATTACGCAGTAAAGAAGAGATCTCAGCCCATTTTGCTGCCGTTTGGGAGGTAATGAAATCAGGTATCGAGCGCGGTGTTAATACCGAAGGCTTATTACCGGGACCATTACGTGTTCCTCGTCGCGCGTCTGCATTACGTCGTATGTTAGTGACTGAAGATAAAACCACCACCGATCCTATGACAGTGGTTGATTGGATCAATATGTTTGCATTAGCCGTAAACGAAGAAAATGCCGCCGGTGGACGTGTTGTAACAGCACCCACTAATGGCGCATGCGGTATTATTCCTGCCGTACTCTCCTATTACGATAAATTTATTCGCCCAGTCAACGAAAACTCTTATACACGCTTTTTCTTAGTAGCCGGTGTTATTGGGTCGCTGTACAAAATGAATGCCTCTATTTCCGGTGCTGAAGTGGGTTGTCAAGGTGAAGTCGGTGTAGCCTGCTCAATGGCTGCAGGGGCTTTAACTGAACTGCTAGGGGGTAGTCCTGAGCAAGTCTGTATTGCGGCTGAAATCGCAATGGAGCATAACTTAGGTCTTACTTGTGATCCGGTTGCAGGACAAGTACAGGTGCCTTGTATCGAGCGTAATGCTATTGCCGCCGTACAAGCGGTAAACTCAGCACGGATGGCGCTTCGTCGTGTCAGTGATCCACGTATCTGTTTAGATAAAGTCATCGAGACTATGTATGAAACAGGTAAAGATATTAATTCTAAATATCGTGAAACATCACAAGGTGGCTTAGCCATTAAAGTCTCTTGCGATTAATTTAACACTTTGACATGATTGTTACCCATAAACCAATGCCAGCTTTTGCT