Homologs in group_447

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01635 FBDBKF_01635 100.0 Morganella morganii S1 sdaA L-serine ammonia-lyase
EHELCC_02105 EHELCC_02105 100.0 Morganella morganii S2 sdaA L-serine ammonia-lyase
LHKJJB_00680 LHKJJB_00680 100.0 Morganella morganii S3 sdaA L-serine ammonia-lyase
HKOGLL_00720 HKOGLL_00720 100.0 Morganella morganii S5 sdaA L-serine ammonia-lyase
F4V73_RS03975 F4V73_RS03975 92.5 Morganella psychrotolerans - L-serine ammonia-lyase
PMI_RS07845 PMI_RS07845 83.7 Proteus mirabilis HI4320 - L-serine ammonia-lyase

Distribution of the homologs in the orthogroup group_447

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_447

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P16095 0.0 776 81 0 454 1 sdaA L-serine dehydratase 1 Escherichia coli (strain K12)
P30744 0.0 691 73 1 455 2 sdaB L-serine dehydratase 2 Escherichia coli (strain K12)
P71349 0.0 655 69 1 455 3 sdaA L-serine dehydratase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42630 0.0 639 69 0 453 1 tdcG L-serine dehydratase TdcG Escherichia coli (strain K12)
O86564 1.27e-162 469 52 6 455 3 sdaA L-serine dehydratase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9ZMU7 2.24e-130 387 43 9 460 3 sdaA L-serine dehydratase Helicobacter pylori (strain J99 / ATCC 700824)
P56072 5.33e-130 386 43 9 460 3 sdaA L-serine dehydratase Helicobacter pylori (strain ATCC 700392 / 26695)
P9WGT5 1.4e-128 383 50 7 457 1 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGT4 1.4e-128 383 50 7 457 3 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66774 1.4e-128 383 50 7 457 3 sdaA L-serine dehydratase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O34607 4.84e-40 148 37 8 282 3 sdaAA Probable L-serine dehydratase, alpha chain Bacillus subtilis (strain 168)
P33073 7.47e-28 115 33 8 285 1 sdhA L-serine dehydratase, alpha chain Peptoniphilus asaccharolyticus
Q48838 3.2e-25 105 38 2 181 3 sdhA Probable L-serine dehydratase, alpha chain (Fragment) Latilactobacillus sakei
O34635 2.56e-06 52 36 8 151 3 sdaAB Probable L-serine dehydratase, beta chain Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_01355
Feature type CDS
Gene sdaA
Product L-serine ammonia-lyase
Location 270439 - 271803 (strand: 1)
Length 1365 (nucleotides) / 454 (amino acids)
In genomic island -

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_447
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03313 Serine dehydratase alpha chain
PF03315 Serine dehydratase beta chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1760 Amino acid transport and metabolism (E) E L-serine deaminase

Kegg Ortholog Annotation(s)

Protein Sequence

MISVFDMFKVGIGPSSSHTVGPMKAGKQFADELVEKGLISRVTRVSVDVYGSLSLTGKGHHTDIAIIMGLAGNLPATVDIDGIAGFIRDVEETERLSLANGQQTVDFPREGGMNFHTGNLPLHENGMSITAFAGDEELYTKTYYSIGGGFIVDAEHFGQDNANETPVSYPYASAEELLNHCHQTGLSVSSLMLKNELDMHSREEIDAYFADVYKTMTDCIAHGLETEGILPGPLRVPRRAAALNRLINSAGKLSKDPMNVVDLVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDHCIEKVTPETYLRYFLACGAVGILYKMNASISGAEVGCQGEVGVACSMAAAGLTEILGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMAMRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD

Flanking regions ( +/- flanking 50bp)

AACGCGCTTTACGATAAATCACTATTACATTGTTTTTTAAGGAGTCTGACGTGATTAGCGTTTTTGACATGTTTAAAGTGGGGATTGGTCCTTCCAGCTCCCACACCGTAGGGCCGATGAAAGCCGGGAAGCAGTTTGCTGATGAGTTGGTTGAAAAAGGTCTGATTTCCCGCGTGACCCGCGTTTCTGTTGATGTCTACGGATCACTCTCCTTAACCGGGAAAGGTCACCATACCGATATCGCTATCATTATGGGTCTGGCCGGTAACTTACCGGCAACTGTCGATATCGATGGTATCGCCGGTTTTATCCGCGATGTCGAAGAGACTGAGCGTCTGTCCCTGGCCAATGGTCAGCAGACTGTGGACTTCCCGCGTGAAGGCGGCATGAATTTCCACACCGGTAACCTGCCGCTGCACGAAAACGGCATGAGTATCACCGCATTTGCCGGTGATGAAGAGCTGTACACCAAAACCTATTACTCCATCGGCGGCGGGTTTATCGTCGATGCCGAGCATTTCGGTCAGGATAACGCCAACGAAACACCGGTATCCTACCCGTATGCCTCAGCAGAAGAACTGCTGAATCACTGTCATCAGACCGGGCTTTCCGTCTCCTCCCTGATGCTGAAAAATGAGCTGGATATGCACAGCCGTGAAGAGATCGACGCGTATTTCGCCGATGTCTACAAAACCATGACTGACTGTATCGCTCACGGTCTGGAAACCGAAGGCATTCTGCCGGGGCCGCTGCGTGTACCGCGCCGTGCCGCTGCACTGAACCGCCTGATCAACTCCGCCGGTAAACTCTCCAAAGACCCGATGAACGTGGTTGACCTGGTCAATATGTTTGCTCTGGCTGTCAACGAAGAAAACGCAGCGGGCGGCCGTGTGGTTACCGCACCGACAAACGGTGCCTGCGGGATCGTCCCTGCGGTACTGGCGTATTATGATCACTGCATCGAGAAAGTCACTCCGGAAACCTATCTCCGCTACTTCCTCGCCTGCGGCGCGGTCGGTATTCTGTACAAAATGAACGCGTCTATCTCCGGTGCGGAAGTCGGTTGCCAGGGCGAAGTCGGCGTGGCCTGCTCAATGGCGGCAGCCGGTCTGACTGAAATCCTCGGCGGCAGCCCGGAACAGGTCTGTGTGGCCGCTGAAATCGGTATGGAACACAACCTGGGCTTAACCTGTGACCCGGTTGCCGGTCAGGTTCAGGTACCGTGCATCGAACGTAACGCCATTGCCTCTGTGAAAGCGATCAACGCTGCCCGTATGGCTATGCGCCGTACCAGCGCACCGCGTGTTTCTCTCGATAAAGTCATCGAAACCATGTATGAAACCGGGAAAGACATGAACGCCAAATACCGTGAAACATCACGCGGCGGTCTTGCAATCAAGGTTCAGTGCGACTGATTTTGTGATTTAACTCACAAAACATAATTCGCTGACATTAATATCCCTGC