Orthogroup:group_41


Homologs in group_41

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01635 FBDBKF_01635 Morganella morganii S1 sdaA L-serine ammonia-lyase
FBDBKF_06960 FBDBKF_06960 Morganella morganii S1 sdaA L-serine ammonia-lyase
EHELCC_02105 EHELCC_02105 Morganella morganii S2 sdaA L-serine ammonia-lyase
EHELCC_04010 EHELCC_04010 Morganella morganii S2 sdaA L-serine ammonia-lyase
NLDBIP_01355 NLDBIP_01355 Morganella morganii S4 sdaA L-serine ammonia-lyase
NLDBIP_04010 NLDBIP_04010 Morganella morganii S4 sdaA L-serine ammonia-lyase
LHKJJB_00680 LHKJJB_00680 Morganella morganii S3 sdaA L-serine ammonia-lyase
LHKJJB_09840 LHKJJB_09840 Morganella morganii S3 sdaA L-serine ammonia-lyase
HKOGLL_00720 HKOGLL_00720 Morganella morganii S5 sdaA L-serine ammonia-lyase
HKOGLL_09135 HKOGLL_09135 Morganella morganii S5 sdaA L-serine ammonia-lyase
F4V73_RS01155 F4V73_RS01155 Morganella psychrotolerans - L-serine ammonia-lyase
F4V73_RS03975 F4V73_RS03975 Morganella psychrotolerans - L-serine ammonia-lyase
PMI_RS03300 PMI_RS03300 Proteus mirabilis HI4320 - L-serine ammonia-lyase
PMI_RS07845 PMI_RS07845 Proteus mirabilis HI4320 - L-serine ammonia-lyase

Distribution of group_41 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_41 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_41

Orthogroup content: 14 members

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This page summarizes the annotation of all members of the orthologous group group_41.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sdaA 10
2 - 4

Product

# Product Occurence
1 L-serine ammonia-lyase 14

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1760 14 E Amino acid transport and metabolism (E) L-serine deaminase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03313 14 Serine dehydratase alpha chain
PF03315 14 Serine dehydratase beta chain

Annotations of the 14 SwissProt hits

Annotation Number of occurrences
L-serine dehydratase 7
L-serine dehydratase 1 1
L-serine dehydratase 2 1
L-serine dehydratase TdcG 1
L-serine dehydratase, alpha chain 1
Probable L-serine dehydratase, alpha chain 1
Probable L-serine dehydratase, alpha chain (Fragment) 1
Probable L-serine dehydratase, beta chain 1

Protein length

Min length 453
Max length 455
Mean length (sd) 454.3 (0.6)
Median length 454.0

Protein length distribution