Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K01752, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.
KO part of 6 pathways
Glycine, serine and threonine metabolism |
Cysteine and methionine metabolism |
Metabolic pathways |
Biosynthesis of secondary metabolites |
Carbon metabolism |
Biosynthesis of amino acids |
KO part of 1 modules
M00975 | Serine and threonine metabolism | Betaine degradation, bacteria, betaine => pyruvate |
Occurence in the database
K01752 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 1 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_41 | PMI_RS03300 | 729577 | 730941 | -1 | L-serine ammonia-lyase | Proteus mirabilis HI4320 | |
1 | group_41 | PMI_RS07845 | 1717135 | 1718496 | 1 | L-serine ammonia-lyase | Proteus mirabilis HI4320 | |
2 | group_41 | FBDBKF_01635 | 20513 | 21877 | -1 | sdaA | L-serine ammonia-lyase | Morganella morganii S1 |
3 | group_41 | EHELCC_02105 | 408333 | 409697 | -1 | sdaA | L-serine ammonia-lyase | Morganella morganii S2 |
4 | group_41 | NLDBIP_01355 | 270439 | 271803 | 1 | sdaA | L-serine ammonia-lyase | Morganella morganii S4 |
5 | group_41 | LHKJJB_00680 | 120882 | 122246 | -1 | sdaA | L-serine ammonia-lyase | Morganella morganii S3 |
6 | group_41 | HKOGLL_00720 | 126393 | 127757 | -1 | sdaA | L-serine ammonia-lyase | Morganella morganii S5 |
7 | group_41 | FBDBKF_06960 | 55707 | 57074 | -1 | sdaA | L-serine ammonia-lyase | Morganella morganii S1 |
8 | group_41 | EHELCC_04010 | 129112 | 130479 | 1 | sdaA | L-serine ammonia-lyase | Morganella morganii S2 |
9 | group_41 | NLDBIP_04010 | 128908 | 130275 | 1 | sdaA | L-serine ammonia-lyase | Morganella morganii S4 |
10 | group_41 | LHKJJB_09840 | 129022 | 130389 | 1 | sdaA | L-serine ammonia-lyase | Morganella morganii S3 |
11 | group_41 | HKOGLL_09135 | 60663 | 62030 | -1 | sdaA | L-serine ammonia-lyase | Morganella morganii S5 |
12 | group_41 | F4V73_RS01155 | 242790 | 244154 | -1 | L-serine ammonia-lyase | Morganella psychrotolerans | |
13 | group_41 | F4V73_RS03975 | 843552 | 844916 | -1 | L-serine ammonia-lyase | Morganella psychrotolerans |