Homologs in group_41

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01635 FBDBKF_01635 74.4 Morganella morganii S1 sdaA L-serine ammonia-lyase
FBDBKF_06960 FBDBKF_06960 100.0 Morganella morganii S1 sdaA L-serine ammonia-lyase
EHELCC_02105 EHELCC_02105 74.4 Morganella morganii S2 sdaA L-serine ammonia-lyase
EHELCC_04010 EHELCC_04010 100.0 Morganella morganii S2 sdaA L-serine ammonia-lyase
NLDBIP_01355 NLDBIP_01355 74.4 Morganella morganii S4 sdaA L-serine ammonia-lyase
NLDBIP_04010 NLDBIP_04010 100.0 Morganella morganii S4 sdaA L-serine ammonia-lyase
LHKJJB_00680 LHKJJB_00680 74.4 Morganella morganii S3 sdaA L-serine ammonia-lyase
LHKJJB_09840 LHKJJB_09840 100.0 Morganella morganii S3 sdaA L-serine ammonia-lyase
HKOGLL_00720 HKOGLL_00720 74.4 Morganella morganii S5 sdaA L-serine ammonia-lyase
F4V73_RS01155 F4V73_RS01155 95.4 Morganella psychrotolerans - L-serine ammonia-lyase
F4V73_RS03975 F4V73_RS03975 73.6 Morganella psychrotolerans - L-serine ammonia-lyase
PMI_RS03300 PMI_RS03300 84.1 Proteus mirabilis HI4320 - L-serine ammonia-lyase
PMI_RS07845 PMI_RS07845 74.0 Proteus mirabilis HI4320 - L-serine ammonia-lyase

Distribution of the homologs in the orthogroup group_41

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_41

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P30744 0.0 777 80 0 455 2 sdaB L-serine dehydratase 2 Escherichia coli (strain K12)
P16095 0.0 751 78 1 455 1 sdaA L-serine dehydratase 1 Escherichia coli (strain K12)
P42630 0.0 678 73 0 452 1 tdcG L-serine dehydratase TdcG Escherichia coli (strain K12)
P71349 0.0 657 68 1 453 3 sdaA L-serine dehydratase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O86564 6.49e-163 470 52 7 459 3 sdaA L-serine dehydratase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P56072 2.66e-132 392 44 9 458 3 sdaA L-serine dehydratase Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMU7 7.48e-132 391 44 10 459 3 sdaA L-serine dehydratase Helicobacter pylori (strain J99 / ATCC 700824)
P9WGT5 1.46e-127 380 49 8 464 1 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGT4 1.46e-127 380 49 8 464 3 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66774 1.46e-127 380 49 8 464 3 sdaA L-serine dehydratase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O34607 2.92e-37 141 37 6 256 3 sdaAA Probable L-serine dehydratase, alpha chain Bacillus subtilis (strain 168)
P33073 4.64e-32 127 36 7 276 1 sdhA L-serine dehydratase, alpha chain Peptoniphilus asaccharolyticus
Q48838 1.36e-26 109 40 2 181 3 sdhA Probable L-serine dehydratase, alpha chain (Fragment) Latilactobacillus sakei
O34635 2.43e-06 52 34 8 152 3 sdaAB Probable L-serine dehydratase, beta chain Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_09135
Feature type CDS
Gene sdaA
Product L-serine ammonia-lyase
Location 60663 - 62030 (strand: -1)
Length 1368 (nucleotides) / 455 (amino acids)

Contig

Accession ZDB_686
Length 191111 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_41
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF03313 Serine dehydratase alpha chain
PF03315 Serine dehydratase beta chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1760 Amino acid transport and metabolism (E) E L-serine deaminase

Kegg Ortholog Annotation(s)

Protein Sequence

MVSVFDIFKIGIGPSSSHTVGPMKAGKQFADDLIAAGLLEKTTRIQVDVYGSLSLTGKGHATDIAIIMGLAGNLPDSVDIDAIPGFIRDVEERERLLLANQRHEVDFPRDNGMNFHKENLPLHENGMSISAFAGDELLYKKTYYSVGGGFIVDEEHFGQAADSETKVPYPYQYAADLQKHCNETGLSLSALVMQNELALHSKEELSAHLAAVWDVMKAGIERGVNTEGLLPGPLRVPRRAAALRRQLVTSDNTSTDPMQVVDWINMFALAVNEENAAGGRVVTAPTNGACGIIPAVLSYYDKFIRPVNENAYTRYFLVSSVIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLTELLGGSPMQVFIAAEIAMEHNLGLTCDPVAGQVQVPCIERNAIAAVQSVNAARMALRRVSEPRVCLDKVIETMYETGKDMNAKYRETSQGGLAIKVIPCD

Flanking regions ( +/- flanking 50bp)

GAATCTTCACGACACTATTAATCCACGCCTTAACATAGGGGGCGAGCAATATGGTCAGTGTATTTGACATCTTCAAAATTGGTATTGGTCCGTCGAGTTCTCACACGGTCGGTCCGATGAAAGCAGGTAAACAGTTCGCTGATGATCTTATCGCGGCCGGACTGCTGGAAAAAACCACCCGCATTCAGGTTGATGTGTACGGCTCTCTGTCTCTGACAGGGAAAGGTCACGCAACAGATATCGCTATCATTATGGGTCTTGCGGGTAACCTGCCGGATTCTGTTGATATTGACGCGATACCGGGCTTTATCAGGGATGTTGAAGAACGTGAACGCCTTTTGCTGGCAAACCAACGCCATGAAGTGGATTTCCCGCGCGATAACGGGATGAACTTCCATAAAGAAAACCTGCCGCTGCATGAAAACGGCATGTCCATCAGCGCATTCGCCGGTGATGAATTACTGTACAAGAAAACCTATTATTCCGTCGGCGGCGGCTTTATCGTCGATGAAGAGCATTTTGGCCAGGCTGCGGACAGCGAAACCAAAGTGCCTTATCCGTACCAGTATGCAGCTGATCTGCAGAAACACTGCAATGAAACCGGGCTGTCTCTGTCAGCACTGGTTATGCAGAATGAACTGGCGCTGCACAGCAAGGAAGAGCTTTCTGCTCACCTGGCGGCAGTCTGGGACGTGATGAAAGCCGGTATCGAGCGTGGTGTGAACACCGAAGGTCTGCTGCCGGGGCCGCTGCGTGTACCACGCCGTGCCGCTGCACTGCGCCGTCAGCTGGTTACCAGTGATAACACCTCCACTGACCCGATGCAGGTTGTTGACTGGATCAACATGTTTGCCCTCGCCGTTAACGAAGAAAACGCCGCCGGCGGCCGTGTTGTTACCGCACCAACCAACGGTGCCTGCGGGATCATCCCGGCAGTACTGTCGTATTACGATAAATTCATCCGTCCGGTGAATGAAAACGCCTATACCCGCTATTTCCTGGTATCCAGCGTGATCGGTTCACTGTACAAAATGAACGCCTCTATTTCCGGTGCGGAAGTGGGTTGTCAGGGTGAAGTCGGTGTTGCCTGTTCCATGGCTGCGGCCGGCCTGACCGAACTGCTGGGCGGCAGCCCGATGCAGGTCTTTATCGCGGCGGAAATCGCGATGGAACACAACCTCGGTCTGACCTGTGACCCGGTCGCCGGGCAGGTACAGGTACCGTGCATCGAGCGTAACGCCATTGCCGCTGTTCAGTCTGTCAACGCCGCCCGTATGGCGCTGCGCCGTGTCAGCGAACCGCGCGTTTGTCTCGATAAAGTTATCGAAACCATGTATGAAACCGGTAAAGATATGAACGCCAAATACCGCGAAACCTCACAGGGCGGCCTGGCAATCAAAGTGATCCCGTGTGACTGATTAACCCCGATCCCCGGAAAGTCAAAAAACCCCCGCAATCTGCATTGCGG