Homologs in group_1523

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09840 FBDBKF_09840 100.0 Morganella morganii S1 sdhC succinate dehydrogenase cytochrome b556 subunit
EHELCC_04640 EHELCC_04640 100.0 Morganella morganii S2 sdhC succinate dehydrogenase cytochrome b556 subunit
NLDBIP_04640 NLDBIP_04640 100.0 Morganella morganii S4 sdhC succinate dehydrogenase cytochrome b556 subunit
HKOGLL_12545 HKOGLL_12545 100.0 Morganella morganii S5 sdhC succinate dehydrogenase cytochrome b556 subunit
F4V73_RS00505 F4V73_RS00505 95.3 Morganella psychrotolerans sdhC succinate dehydrogenase cytochrome b556 subunit
PMI_RS02780 PMI_RS02780 84.1 Proteus mirabilis HI4320 sdhC succinate dehydrogenase cytochrome b556 subunit

Distribution of the homologs in the orthogroup group_1523

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1523

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P63725 1.76e-68 205 79 0 129 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P63726 1.76e-68 205 79 0 129 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Salmonella typhi
P69054 1.38e-66 200 75 0 129 1 sdhC Succinate dehydrogenase cytochrome b556 subunit Escherichia coli (strain K12)
P69055 1.38e-66 200 75 0 129 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Escherichia coli O157:H7
P51055 2.54e-21 85 38 2 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q59659 3.62e-13 64 32 1 123 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Paracoccus denitrificans
Q4UKC1 1.27e-11 60 32 3 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
P41085 1.53e-10 57 33 5 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia prowazekii (strain Madrid E)
Q68XP1 2.19e-10 57 33 5 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q92J99 3.25e-10 57 34 5 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q1RHB5 5.15e-08 51 34 6 128 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia bellii (strain RML369-C)
Q8T2T5 1.74e-06 48 29 5 119 3 sdhC Succinate dehydrogenase cytochrome b560 subunit, mitochondrial Dictyostelium discoideum

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_13990
Feature type CDS
Gene sdhC
Product succinate dehydrogenase cytochrome b556 subunit
Location 78403 - 78792 (strand: 1)
Length 390 (nucleotides) / 129 (amino acids)

Contig

Accession ZDB_371
Length 143607 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1523
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2009 Energy production and conversion (C) C Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MGKIVKKQRPVNLDLQTIHFPIPAIASILHRVSGVITFIAVAILLWLLGLSLSSPEGFAQAADIMSGFFAKFILWGILTALAYHICGGIRHMLMDFGFVDETLAAGISSAKISMVLTVILAVLAGVLVW

Flanking regions ( +/- flanking 50bp)

TGTCTGATTTCCGCCCGGGTCCGGAGGAAGGAAAAATAATAAAGAGCTGTGTGGGCAAAATTGTGAAAAAACAACGACCTGTCAATTTAGACTTGCAGACGATCCACTTTCCGATCCCTGCAATCGCTTCAATTTTACACCGTGTCTCAGGCGTCATTACCTTCATTGCTGTAGCGATTCTGCTGTGGTTATTAGGGTTGTCGCTGTCCTCGCCGGAAGGGTTTGCGCAGGCTGCTGATATCATGAGCGGTTTCTTCGCGAAGTTTATCCTCTGGGGCATCCTCACTGCATTGGCTTACCACATCTGTGGTGGCATTCGTCACATGTTAATGGATTTCGGATTTGTTGATGAAACACTGGCTGCCGGTATTTCATCCGCGAAGATTTCCATGGTTCTGACTGTGATTTTAGCCGTGTTGGCGGGGGTTCTGGTATGGTGAAAAATTCAAAAATCAGTGCGACCACGCTCGGCCGTAACGGTATTCAGGAT