COG2009


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2009, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG2009 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1523 FBDBKF_09840 64825 65214 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S1
1 group_1523 EHELCC_04640 256790 257179 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S2
2 group_1523 NLDBIP_04640 256586 256975 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S4
3 group_1523 LHKJJB_13990 78403 78792 1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S3
4 group_1523 HKOGLL_12545 65606 65995 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S5
5 group_1523 F4V73_RS00505 107217 107606 1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella psychrotolerans
6 group_1523 PMI_RS02780 610269 610649 1 sdhC succinate dehydrogenase cytochrome b556 subunit Proteus mirabilis HI4320