K00241


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K00241, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K00241
KO K00241
Description succinate dehydrogenase cytochrome b subunit

KO part of 8 pathways

Citrate cycle (TCA cycle)
Oxidative phosphorylation
Butanoate metabolism
Carbon fixation pathways in prokaryotes
Metabolic pathways
Biosynthesis of secondary metabolites
Microbial metabolism in diverse environments
Carbon metabolism

KO part of 6 modules

M00009 Central carbohydrate metabolism Citrate cycle (TCA cycle, Krebs cycle)
M00011 Central carbohydrate metabolism Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00149 ATP synthesis Succinate dehydrogenase, prokaryotes
M00173 Carbon fixation Reductive citrate cycle (Arnon-Buchanan cycle)
M00374 Carbon fixation Dicarboxylate-hydroxybutyrate cycle
M00376 Carbon fixation 3-Hydroxypropionate bi-cycle

Occurence in the database

K00241 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1523 PMI_RS02780 610269 610649 1 sdhC succinate dehydrogenase cytochrome b556 subunit Proteus mirabilis HI4320
1 group_1523 FBDBKF_09840 64825 65214 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S1
2 group_1523 EHELCC_04640 256790 257179 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S2
3 group_1523 NLDBIP_04640 256586 256975 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S4
4 group_1523 LHKJJB_13990 78403 78792 1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S3
5 group_1523 HKOGLL_12545 65606 65995 -1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella morganii S5
6 group_1523 F4V73_RS00505 107217 107606 1 sdhC succinate dehydrogenase cytochrome b556 subunit Morganella psychrotolerans