Homologs in group_1523

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09840 FBDBKF_09840 84.1 Morganella morganii S1 sdhC succinate dehydrogenase cytochrome b556 subunit
EHELCC_04640 EHELCC_04640 84.1 Morganella morganii S2 sdhC succinate dehydrogenase cytochrome b556 subunit
NLDBIP_04640 NLDBIP_04640 84.1 Morganella morganii S4 sdhC succinate dehydrogenase cytochrome b556 subunit
LHKJJB_13990 LHKJJB_13990 84.1 Morganella morganii S3 sdhC succinate dehydrogenase cytochrome b556 subunit
HKOGLL_12545 HKOGLL_12545 84.1 Morganella morganii S5 sdhC succinate dehydrogenase cytochrome b556 subunit
F4V73_RS00505 F4V73_RS00505 80.2 Morganella psychrotolerans sdhC succinate dehydrogenase cytochrome b556 subunit

Distribution of the homologs in the orthogroup group_1523

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1523

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P63725 3.62e-69 206 80 0 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P63726 3.62e-69 206 80 0 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Salmonella typhi
P69054 1.24e-67 202 77 0 125 1 sdhC Succinate dehydrogenase cytochrome b556 subunit Escherichia coli (strain K12)
P69055 1.24e-67 202 77 0 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Escherichia coli O157:H7
P51055 9.6e-21 84 36 2 126 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q59659 3.3e-12 62 30 1 118 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Paracoccus denitrificans
Q4UKC1 8.74e-10 55 30 3 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q68XP1 2.88e-09 54 30 2 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P41085 9.84e-09 53 28 2 125 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia prowazekii (strain Madrid E)
Q92J99 3.33e-08 51 31 1 94 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q8T2T5 2.66e-06 47 30 3 90 3 sdhC Succinate dehydrogenase cytochrome b560 subunit, mitochondrial Dictyostelium discoideum
Q1RHB5 7.22e-06 45 29 3 127 3 sdhC Succinate dehydrogenase cytochrome b556 subunit Rickettsia bellii (strain RML369-C)
P35721 0.000114 42 32 2 102 3 SDH3 Succinate dehydrogenase cytochrome b560 subunit Marchantia polymorpha

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02780
Feature type CDS
Gene sdhC
Product succinate dehydrogenase cytochrome b556 subunit
Location 610269 - 610649 (strand: 1)
Length 381 (nucleotides) / 126 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1523
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2009 Energy production and conversion (C) C Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MVKKQRPVNLDLQTIQFPLPAIASILHRVSGVIMLVAVGILLWLLGTSLSSPEGFQQAADIMTGFFAKFILWGILTALAYHICGGIRHMLMDFGFIDETLVVGRRSAAISMIITVILSILAGVLVW

Flanking regions ( +/- flanking 50bp)

TCCATCCAGGTCCGGAGGAAGGAAAAATTATAAAAGCTGTGTGGGCATAAATTGTGAAAAAACAAAGACCTGTCAATCTGGATTTACAGACGATACAGTTTCCACTCCCTGCTATCGCATCGATCTTGCATCGTGTCTCAGGGGTTATCATGTTAGTCGCAGTTGGTATTTTACTGTGGTTACTTGGCACCTCTCTCTCATCTCCCGAAGGTTTTCAGCAAGCCGCTGATATCATGACTGGCTTCTTCGCGAAGTTTATTTTATGGGGCATCCTAACAGCATTGGCATACCACATTTGTGGTGGTATTCGTCATATGTTAATGGACTTCGGCTTTATTGATGAAACATTGGTTGTTGGTCGTCGTTCTGCGGCAATTTCAATGATTATTACCGTTATTTTATCAATATTGGCGGGGGTATTAGTATGGTAAGTAATTCTTCTACTTTAGGCCGTACAGGCATACAGGATTGGTTATTCCTA