Orthogroup:group_1523



Homologs in group_1523

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09840 FBDBKF_09840 Morganella morganii S1 sdhC succinate dehydrogenase cytochrome b556 subunit
EHELCC_04640 EHELCC_04640 Morganella morganii S2 sdhC succinate dehydrogenase cytochrome b556 subunit
NLDBIP_04640 NLDBIP_04640 Morganella morganii S4 sdhC succinate dehydrogenase cytochrome b556 subunit
LHKJJB_13990 LHKJJB_13990 Morganella morganii S3 sdhC succinate dehydrogenase cytochrome b556 subunit
HKOGLL_12545 HKOGLL_12545 Morganella morganii S5 sdhC succinate dehydrogenase cytochrome b556 subunit
F4V73_RS00505 F4V73_RS00505 Morganella psychrotolerans sdhC succinate dehydrogenase cytochrome b556 subunit
PMI_RS02780 PMI_RS02780 Proteus mirabilis HI4320 sdhC succinate dehydrogenase cytochrome b556 subunit

Distribution of group_1523 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1523 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1523

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1523.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sdhC 7

Product

# Product Occurence
1 succinate dehydrogenase cytochrome b556 subunit 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2009 7 C Energy production and conversion (C) Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01127 7 Succinate dehydrogenase/Fumarate reductase transmembrane subunit

Annotations of the 14 SwissProt hits

Annotation Number of occurrences
Succinate dehydrogenase cytochrome b556 subunit 11
Succinate dehydrogenase cytochrome b560 subunit 2
Succinate dehydrogenase cytochrome b560 subunit, mitochondrial 1

Protein length

Min length 126
Max length 129
Mean length (sd) 128.6 (1.1)
Median length 129.0

Protein length distribution