Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 24.5 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 27.9 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 27.9 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 24.5 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 27.9 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 24.5 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 27.9 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 24.5 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 24.5 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 27.9 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 26.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 28.7 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 27.5 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 27.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 21.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 24.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 26.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 29.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 25.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 28.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 25.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45998 1.28e-98 329 28 16 828 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 1.96e-96 323 28 16 828 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 3.75e-94 317 28 16 828 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 1.01e-91 311 28 22 831 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P46009 9.74e-85 292 27 28 885 3 focD Outer membrane usher protein FocD Escherichia coli
P42915 5.03e-83 286 28 25 829 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P33341 1.16e-82 285 27 19 788 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P37924 3.92e-82 285 26 22 869 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 2.64e-80 280 27 23 847 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P21647 2.95e-77 270 27 24 809 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33408 5.24e-77 270 27 25 795 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q8XDD1 4.54e-75 265 28 22 790 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P33410 1.52e-74 264 27 20 805 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P75857 2.49e-74 263 28 21 790 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P43662 3.29e-74 262 27 25 830 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 2.11e-70 252 25 20 852 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
Q56983 4.37e-68 245 26 23 812 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 4.37e-68 245 26 23 812 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33388 9.42e-61 224 26 24 776 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P26949 3.18e-55 208 26 28 782 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 1.81e-53 203 25 32 821 3 aggC Outer membrane usher protein AggC Escherichia coli
P53517 1.93e-53 203 25 31 809 3 afaC Outer membrane usher protein AfaC Escherichia coli
P15484 7.63e-48 187 24 25 775 3 None Outer membrane usher protein CS3-2 Escherichia coli
P53513 2.81e-46 181 25 20 730 3 cssD Outer membrane usher protein CssD Escherichia coli
P76655 9.02e-46 180 27 32 804 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P77196 1.69e-45 179 24 24 822 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53512 2.68e-44 175 25 20 731 3 cssD Outer membrane usher protein CssD Escherichia coli
P12050 5.63e-44 174 23 27 788 3 fanD Outer membrane usher protein FanD Escherichia coli
P37868 6.61e-43 171 24 27 787 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P07110 2.49e-42 169 26 34 832 1 papC Outer membrane usher protein PapC Escherichia coli
P46000 1.7e-41 167 24 27 826 3 fasD Outer membrane usher protein FasD Escherichia coli
P75750 4.3e-41 166 25 30 826 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P53514 1.03e-37 155 24 30 806 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P06970 6.54e-35 146 24 28 824 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q8X5K8 2.2e-34 141 26 14 472 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
Q8X5K7 7.61e-30 125 29 11 348 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q7DBJ9 1.44e-22 104 25 10 360 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P45420 2.09e-21 103 21 24 755 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P76137 4.51e-21 99 24 10 359 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12580
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 109377 - 111890 (strand: -1)
Length 2514 (nucleotides) / 837 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Protein Sequence

MKGFNYLPVILFSVMLPCSMVLADDNDDDDYEFNPAFIKNYAVSDDVDLRVLATDNDQMPGLYSTDVYINEQHIGQFLIKLESKDEKLQLCLTPELIDSMGLTDSLVQLYHKKYETQDENSCSSLSDLIPESFFEFIFNKQQLSVSVPQRDLLKPVPPESNPNNWDEGNSVIFSNYFYNRYTTRAEGYENTADSLTLNSGVNFYKWRLRHDSQINDDKYSAVMTWLERDIDSVRGKLTLGDFYSGSVFSNGSSLRGVRLRNDNSMLSSRETGFAPIIQGIAKTQSQVKVYLADSGTEIYSTVVPAGPFEISDLLPLYYSGDLRVDIIGAGGDVQKMNIPVQSGLAFTRPGKLDFDIGVGKLRYRNSVFGDPVTDASLRYGINNRISASLGTVVSNDYLSGAAGMTINTPVGAFNGEVIHAKAQLKDTDKTLEGSSYKLSYSKSFAATETYINLSSIQFDSKNYISVYNAMQINDAHYQYDDQQQNNAYKLKTQYTLSMSQRLPYNTGSISMSGSTADYWNSSASSKQYTLSYSATVFDAGVIASLQKTDNQYNKDTLFSLSLSIPLSVGDSTYLTSNYLSSDSTRNIGAGVSGRLNENLDYSLSAGQDRYDGEANRYATAGARYKTSFADFSSDYSHYPDAKTLSLSASGAIVGHSGGLLFSNTLGSSFAVIKAEGVENAQVIGADTTTNSAGYAIQPNLVPYRKNLIGVETKDLGQNYTIEESKRMVIPRSGSAVFVTLDTRIGAPVVLKATDEQGHALSLGATVYSNDNTPLTFVGQGGKIFLNLNEKLTKILVDTNSADGGQCEVDLNAINQKYLMNDKVSVVTVTCGVIDHEN

Flanking regions ( +/- flanking 50bp)

GCAGTTCAGATTCGGTTAAAATAGTAAATTAAGGTTATTGGGCTAATTTCATGAAAGGGTTTAATTATCTGCCGGTTATTTTATTCTCGGTCATGCTGCCGTGCAGCATGGTATTGGCTGACGATAATGACGACGATGATTATGAATTTAACCCTGCATTTATTAAAAATTACGCAGTTAGTGACGATGTCGATTTACGTGTGCTGGCGACTGATAATGATCAGATGCCGGGATTATACAGCACGGATGTTTATATTAATGAACAGCACATCGGTCAGTTTCTCATTAAGCTTGAGAGTAAAGATGAGAAATTACAGCTTTGTTTAACACCTGAATTAATTGATTCCATGGGATTAACCGATTCACTTGTTCAGCTGTATCATAAGAAATATGAAACTCAGGATGAAAATAGCTGCTCTTCTTTATCAGACCTGATACCCGAATCATTTTTCGAATTTATTTTCAATAAACAGCAACTTTCTGTTTCTGTTCCGCAACGCGATTTACTTAAACCAGTCCCGCCGGAAAGTAATCCGAACAATTGGGATGAAGGTAATTCCGTCATATTCAGTAATTATTTTTATAACCGCTATACCACCCGTGCGGAAGGTTATGAAAATACCGCCGATTCATTGACATTAAACTCAGGTGTGAATTTTTATAAATGGCGTCTGCGCCATGACAGTCAGATTAATGATGATAAATATTCAGCGGTAATGACCTGGCTTGAGCGGGATATTGATAGTGTCAGAGGAAAACTGACACTCGGTGATTTTTATTCCGGCTCTGTGTTTTCTAATGGCAGTTCATTGCGCGGTGTCAGATTACGCAATGATAACAGCATGTTATCCAGTCGTGAAACCGGTTTTGCGCCGATTATTCAGGGAATAGCCAAAACACAGTCGCAGGTAAAAGTGTACCTTGCGGACTCCGGCACAGAGATTTACAGCACAGTTGTTCCCGCGGGACCTTTTGAAATAAGTGATCTGCTGCCGCTCTATTATTCGGGTGATTTGCGTGTTGATATTATCGGCGCCGGTGGTGACGTACAAAAGATGAACATTCCGGTTCAGAGCGGGCTGGCATTTACCCGCCCGGGAAAATTAGACTTTGATATTGGTGTGGGTAAATTACGTTACCGGAATAGTGTCTTTGGTGATCCGGTAACAGATGCGTCACTGCGCTATGGTATTAATAACCGGATATCGGCTTCTCTGGGAACGGTGGTCAGTAATGATTATTTATCCGGCGCGGCAGGTATGACGATAAATACACCCGTCGGGGCATTTAATGGTGAAGTTATTCATGCAAAAGCCCAACTGAAAGACACGGATAAAACCCTTGAAGGGAGCTCCTATAAACTCAGTTACAGCAAATCATTTGCGGCAACCGAAACCTATATAAACCTGTCTTCTATACAGTTTGATTCTAAGAACTACATCAGTGTTTATAACGCGATGCAGATAAATGATGCGCATTATCAATATGATGATCAGCAGCAAAATAATGCGTATAAACTGAAAACCCAATATACATTATCAATGAGCCAGCGCCTGCCTTATAACACCGGCAGTATCAGTATGAGTGGTTCAACGGCGGATTACTGGAACAGCAGCGCAAGCAGCAAACAATATACACTCTCTTATTCGGCAACGGTTTTTGATGCCGGTGTTATTGCGTCATTACAAAAAACAGATAACCAATATAATAAAGATACCCTTTTTTCACTGTCACTGAGTATCCCGCTTTCTGTCGGTGACAGCACCTATCTGACCAGTAATTATCTCTCTTCAGACAGTACCCGCAATATTGGTGCCGGTGTCAGCGGACGGCTGAATGAAAATCTCGATTATTCATTATCTGCCGGACAGGACAGATATGACGGTGAAGCAAACCGGTATGCAACGGCCGGAGCGCGTTATAAAACATCATTTGCGGATTTTTCTTCGGATTACAGCCATTATCCTGACGCCAAAACATTGAGTCTGAGTGCTTCCGGGGCAATAGTCGGTCACAGCGGAGGACTTTTGTTCTCCAATACGCTGGGAAGTTCATTCGCTGTTATTAAGGCGGAAGGTGTTGAAAATGCGCAGGTTATTGGAGCGGATACAACAACTAACAGCGCCGGTTATGCTATCCAGCCGAATTTAGTGCCTTACCGGAAGAATTTAATCGGCGTGGAAACCAAAGATCTGGGGCAGAATTACACCATTGAAGAATCAAAGAGAATGGTTATCCCGCGCTCCGGCAGTGCGGTGTTTGTGACGCTGGATACCCGGATTGGTGCGCCGGTCGTCCTGAAAGCCACGGATGAACAGGGGCATGCATTGTCCCTTGGCGCCACCGTCTATAGTAATGATAATACGCCACTTACGTTTGTCGGACAGGGCGGGAAAATCTTCCTGAATCTGAATGAGAAACTGACAAAGATTCTGGTGGATACCAATTCGGCTGATGGTGGTCAGTGTGAGGTAGATCTGAATGCAATTAATCAGAAATACCTTATGAATGATAAAGTTTCAGTTGTCACAGTGACCTGCGGGGTGATTGATCATGAGAATTAACTGTTTGTTTTCCCTGTTATTGATGATTACCAGCATGCAGGTATCAGCAT