Orthogroup:group_6


Homologs in group_6

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22 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_20025 FBDBKF_20025 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of group_6 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_6 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_6

Orthogroup content: 22 members

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This page summarizes the annotation of all members of the orthologous group group_6.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 16
2 fimD 6

Product

# Product Occurence
1 fimbrial biogenesis usher protein 6
2 Outer membrane usher protein FimD/PapC 5
3 fimbria/pilus outer membrane usher protein 10
4 outer membrane usher protein FimD 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3188 22 NW Cell motility (N)
Extracellular structures (W)		 Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07347 19 outer membrane usher protein Two-component system
Pertussis		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00577 22 Outer membrane usher protein
PF13953 22 PapC C-terminal domain
PF13954 21 PapC N-terminal domain

Annotations of the 39 SwissProt hits

Annotation Number of occurrences
F1 capsule-anchoring protein 1
Fimbrial usher domain-containing protein YdeT 2
Outer membrane usher protein AfaC 1
Outer membrane usher protein AggC 1
Outer membrane usher protein CS3-2 1
Outer membrane usher protein CssD 2
Outer membrane usher protein FaeD 1
Outer membrane usher protein FanD 1
Outer membrane usher protein FasD 1
Outer membrane usher protein FimC 1
Outer membrane usher protein FimD 2
Outer membrane usher protein FocD 1
Outer membrane usher protein HifC 3
Outer membrane usher protein HtrE 1
Outer membrane usher protein LpfC 1
Outer membrane usher protein MrkC 1
Outer membrane usher protein MyfC 1
Outer membrane usher protein PapC 1
Outer membrane usher protein PefC 1
Outer membrane usher protein PmfC 1
Outer membrane usher protein PsaC 2
Outer membrane usher protein SefC 1
Outer membrane usher protein SfmD 1
Outer membrane usher protein YehB 1
Outer membrane usher protein YraJ 1
Probable outer membrane usher protein ElfC 2
Probable outer membrane usher protein LpfC 1
Probable outer membrane usher protein LpfC' 1
Putative outer membrane usher protein YfcU 1
Putative outer membrane usher protein YqiG 1
Uncharacterized outer membrane usher protein YbgQ 1
Uncharacterized outer membrane usher protein YhcD 1

Protein length

Min length 771
Max length 904
Mean length (sd) 852.5 (28.9)
Median length 862.0

Protein length distribution