Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 30.2 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 30.1 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 30.1 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 30.2 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 30.1 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 30.2 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 30.1 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 30.2 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 30.2 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 30.1 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 29.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 31.3 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 29.6 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 26.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 19.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 26.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 29.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 29.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 31.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 29.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 27.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33129 2.1e-122 392 31 16 809 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P30130 5.1e-114 371 32 21 837 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P37924 3.32e-106 350 32 22 798 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75857 1.16e-105 348 31 22 842 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P46009 3.04e-105 347 32 27 820 3 focD Outer membrane usher protein FocD Escherichia coli
Q8XDD1 1.45e-104 345 31 21 839 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P43662 3.15e-103 341 32 22 806 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 3.18e-97 325 29 15 789 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P45997 1.06e-95 321 29 13 795 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P21647 5.18e-95 319 29 21 817 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33397 1.28e-94 318 28 13 798 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 1.26e-93 315 28 13 798 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P77468 7.17e-93 314 29 24 811 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P33341 2.08e-92 311 29 21 774 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33410 6.63e-92 311 28 20 846 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P53517 2.98e-78 274 28 28 835 3 afaC Outer membrane usher protein AfaC Escherichia coli
P26949 3.04e-73 259 28 26 792 1 caf1A F1 capsule-anchoring protein Yersinia pestis
Q56983 1.06e-68 247 27 21 790 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.06e-68 247 27 21 790 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P46000 2.39e-68 246 29 16 707 3 fasD Outer membrane usher protein FasD Escherichia coli
P33408 3.25e-67 243 26 25 823 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P33388 4.84e-66 239 26 21 775 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P76655 2.3e-59 220 25 30 837 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P46005 7.68e-59 219 25 26 821 3 aggC Outer membrane usher protein AggC Escherichia coli
P77196 8.95e-54 204 24 28 863 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 1.18e-53 203 25 28 843 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 4.25e-53 202 25 27 827 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P15484 3.29e-51 197 25 22 750 3 None Outer membrane usher protein CS3-2 Escherichia coli
P75750 1.86e-49 191 26 26 778 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
Q8X5K7 7.19e-49 180 32 8 340 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P12050 2.27e-47 184 26 27 776 3 fanD Outer membrane usher protein FanD Escherichia coli
P37868 2.87e-44 175 26 30 768 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53512 1.05e-43 174 24 28 781 3 cssD Outer membrane usher protein CssD Escherichia coli
Q8X5K8 2.24e-43 167 29 14 472 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P53513 3.44e-40 162 23 25 786 3 cssD Outer membrane usher protein CssD Escherichia coli
P06970 5.22e-39 159 24 29 851 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 4.32e-27 121 23 29 693 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 4.26e-22 102 29 9 335 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.18e-20 98 29 9 335 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09375
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1972333 - 1974834 (strand: -1)
Length 2502 (nucleotides) / 833 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MDNAGVNYNAGFIQGMSVDLAEYAYGNPVPEGIYTVTVLANEIDRGKQSISFKAESGGKQAQACFSASQISELGIITDARLKGSAENTAAGAAECYPITHYVAYGKAYYNTADLELVLTLPQANMPKGSEGYVDPSRWDAGVTTMFIDYNVNAYANRSKTDGESDTDYSANLNWTLGLNIGEWRFRNRSNSSWTSNGENKTKNVMTYAETDITPLKSRLTLGDVYTSSRVFESYNLRGAILNSDMQMLPDSLSSYKPVISGIAESNARVILKQGGHTIYETTVTPGPFELSDFGALSYSGNIQMVIIEADGREKLQDVVFSAPPMMMYPGVSSYAIQLGVLNESGTDGSPKIAQGEYAYGINNFLSVYTGFQLAEKYHAVVIGNALNTPLGGISLDMTHARSDFGDAIKSGDSFRINYSKLFNATNTNLMLSTYRYSTEGYYTFRDAMYWNQRGGIKALDNYTPGPDEYKNNYYAIGTRAKNQFSINLNQPIWDGAAVNMAASYFDYWGDRPAGTQVSLGYNQMMKYFSYSLVYQRTKTAYDTYDDTYMANVNIPLPQSYGVKPLFSNLYLSAVRNADGKTGFQSSVSGYQGEENELSYSFGGRTNFDSGSEADSLTASASYNTSVAALGSTASMDSRSNRQLSLTANGSIVAHEGGVTLGPSLGGSAFAIVQADGAEGAKFLNGYGTKIDSRGYAIVPNLTAYRENQVALNTRNMEADVDVLDDISTVVPRSGAAVQIKIKTIAGKPVVLIVRDKNGEFLPIGTNVHGSDGEYLTIIGQAGMAYIRGWDGASGALQVKSASVGECHINPDASVASQIASAQDGITQLEVKCI

Flanking regions ( +/- flanking 50bp)

TTCCCGTTGTTGTTTTTGGAGAAACAGGTAACTCATCACCGGAAAGCGCTGTGGATAATGCAGGTGTTAATTATAACGCAGGCTTTATTCAGGGGATGAGTGTCGATCTCGCTGAATACGCATATGGAAATCCGGTACCTGAAGGTATTTATACCGTCACAGTACTTGCTAATGAGATAGACAGAGGGAAGCAGAGTATCTCATTTAAAGCGGAATCCGGCGGAAAGCAGGCACAGGCCTGTTTTTCGGCTTCACAAATTAGTGAGTTAGGTATTATCACCGATGCACGGCTTAAGGGGTCTGCTGAAAATACCGCAGCGGGGGCGGCTGAGTGTTACCCGATAACGCATTATGTTGCGTATGGGAAAGCGTATTATAATACGGCTGATCTTGAATTGGTTCTGACGCTCCCCCAGGCAAATATGCCTAAAGGATCCGAGGGGTATGTTGATCCTTCCCGGTGGGATGCAGGGGTCACGACCATGTTTATTGATTATAATGTGAATGCCTACGCCAACCGTTCCAAGACTGACGGAGAGTCCGATACTGATTATAGTGCCAACCTGAACTGGACTCTGGGGCTGAACATCGGAGAGTGGCGGTTTCGTAACCGCAGTAACTCATCCTGGACATCAAACGGTGAAAATAAAACCAAAAATGTAATGACCTATGCGGAAACTGATATTACACCGCTGAAAAGTCGTTTGACGTTGGGGGATGTTTATACCAGCAGCCGGGTTTTTGAGTCTTATAATCTGCGCGGGGCGATACTGAATTCCGATATGCAGATGTTGCCTGATTCACTTAGCAGCTACAAGCCGGTTATATCAGGTATTGCGGAAAGTAACGCACGCGTTATTTTAAAACAGGGCGGGCATACAATATATGAAACGACGGTAACGCCGGGACCGTTTGAATTATCTGATTTTGGTGCGCTATCTTACTCCGGTAACATTCAGATGGTTATCATTGAAGCTGATGGCCGGGAAAAATTACAGGACGTCGTTTTCTCTGCACCACCAATGATGATGTATCCGGGTGTTTCATCATATGCCATACAACTTGGTGTATTAAATGAATCCGGTACTGATGGTTCACCTAAAATTGCGCAGGGTGAATATGCCTACGGTATAAATAACTTTTTATCTGTTTACACGGGTTTTCAGTTAGCCGAAAAATATCATGCAGTCGTGATTGGTAATGCCCTGAATACACCGCTTGGTGGTATTTCCCTTGATATGACTCATGCCCGCAGTGACTTCGGCGATGCTATTAAGTCCGGGGACAGTTTCCGTATTAACTACAGTAAATTATTCAACGCCACAAATACAAACCTGATGCTCTCCACTTACCGCTATTCGACAGAAGGGTATTACACTTTCCGTGATGCGATGTACTGGAATCAGCGCGGTGGTATTAAAGCGTTAGATAACTACACTCCGGGACCTGACGAATATAAAAATAACTATTACGCTATCGGAACCCGCGCCAAAAATCAGTTTTCAATTAACCTGAACCAACCTATCTGGGATGGTGCTGCTGTAAATATGGCTGCAAGTTATTTTGACTATTGGGGCGATCGTCCGGCAGGTACACAAGTATCATTGGGTTATAACCAGATGATGAAATATTTTTCATATTCTCTGGTGTATCAACGAACAAAAACAGCGTATGACACCTATGACGATACTTATATGGCGAACGTCAATATTCCGTTGCCTCAGTCTTATGGTGTAAAACCGTTGTTTAGTAATTTATATCTGTCTGCTGTGCGTAATGCTGATGGTAAAACAGGATTTCAGTCTTCTGTATCCGGTTATCAGGGGGAAGAAAATGAACTGTCTTATAGTTTCGGGGGCAGAACAAACTTTGATTCCGGTAGTGAGGCTGACAGCCTGACAGCGTCTGCCAGCTATAACACGTCTGTCGCTGCGTTAGGTTCAACCGCATCAATGGACAGTCGTTCTAACCGTCAGTTATCCCTGACCGCAAACGGCAGTATTGTGGCTCATGAAGGTGGCGTAACACTGGGTCCGTCACTGGGTGGCTCTGCATTTGCCATTGTTCAGGCCGACGGGGCTGAAGGCGCTAAGTTCCTGAACGGTTACGGAACCAAAATTGACAGCAGAGGGTATGCAATCGTGCCTAATCTGACCGCATACCGTGAAAACCAGGTCGCATTGAATACCCGCAATATGGAAGCGGATGTTGATGTGCTGGATGATATATCCACCGTCGTTCCACGCTCCGGTGCTGCGGTACAGATTAAGATAAAAACAATTGCCGGTAAGCCTGTAGTATTAATTGTCAGAGATAAAAACGGTGAATTCCTGCCGATTGGTACGAATGTTCATGGCAGTGACGGTGAATATCTGACTATTATTGGCCAGGCAGGAATGGCATATATCCGTGGCTGGGATGGCGCTTCCGGTGCTCTTCAGGTGAAATCAGCATCTGTGGGAGAATGTCATATTAATCCTGATGCTTCGGTTGCATCACAAATAGCATCTGCACAGGATGGAATTACTCAGCTGGAGGTCAAATGTATTTAAATATTGTTAAATTCAGCAAAGTAAAATATTTATCAATACTAATTGTTTTA