Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 30.1 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 30.1 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 30.1 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 30.1 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 30.1 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 30.1 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 30.1 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 30.1 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 30.1 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 30.1 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 24.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 30.7 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 30.9 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 28.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 17.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 30.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 26.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 28.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 34.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 24.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 28.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 2.86e-108 354 31 21 833 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46009 9.83e-108 353 31 24 873 3 focD Outer membrane usher protein FocD Escherichia coli
P75857 5.74e-99 330 28 20 855 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 1.01e-98 329 28 19 854 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P42915 2.02e-97 325 31 20 817 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P30130 9.21e-97 324 29 23 857 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P37924 8.74e-96 321 29 21 872 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 8.16e-94 316 29 21 857 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P33388 6.04e-75 263 26 27 853 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P53517 6.29e-71 253 30 20 718 3 afaC Outer membrane usher protein AfaC Escherichia coli
P26949 3.47e-70 250 28 28 821 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P53512 1.76e-66 240 24 21 765 3 cssD Outer membrane usher protein CssD Escherichia coli
Q56983 1.27e-64 235 27 27 859 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.27e-64 235 27 27 859 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P53513 2.34e-64 234 24 22 767 3 cssD Outer membrane usher protein CssD Escherichia coli
P46005 1.07e-62 229 26 22 845 3 aggC Outer membrane usher protein AggC Escherichia coli
P33408 4.55e-62 228 27 22 709 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P15484 1.56e-60 224 26 22 715 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33129 2.45e-59 220 26 29 843 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P21647 2.29e-55 208 27 27 708 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33397 7.44e-55 207 24 21 824 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 2.75e-54 205 25 20 728 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33341 3.66e-54 204 25 19 764 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P76655 9.07e-54 203 25 25 803 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P46000 1.08e-52 200 24 25 859 3 fasD Outer membrane usher protein FasD Escherichia coli
P45997 3.15e-52 199 24 21 824 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P77196 3.11e-51 196 25 31 837 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
Q8X5K8 4.99e-50 186 28 11 499 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P53514 1.64e-46 182 26 28 718 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P33410 1.75e-45 179 25 14 705 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P75750 2.94e-44 175 32 13 425 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P75750 2.59e-06 55 27 4 144 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P07110 8.43e-41 164 25 28 819 1 papC Outer membrane usher protein PapC Escherichia coli
Q8X5K7 1.39e-37 148 29 10 359 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q7DBJ9 6.08e-34 137 30 5 294 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P45420 7e-34 143 23 22 705 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P76137 7.8e-33 134 30 4 293 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P06970 9.22e-27 120 24 29 798 3 faeD Outer membrane usher protein FaeD Escherichia coli
P37868 9.99e-26 117 22 25 785 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 1.71e-25 116 21 24 656 3 fanD Outer membrane usher protein FanD Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07390
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 1542315 - 1544768 (strand: -1)
Length 2454 (nucleotides) / 817 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Protein Sequence

MYLKKTHLIFMIVTGIYSVSTFSKPYFNPAALGIGSTDSTIDIVQFQQLSERQFQNEGRYFVSVSVNQQVQSGQWIEFRYHPVRKQLLPLVSRRQWLMWGLRPDAGAEFERMDDTAQIDDITRLVSVVNVTFDAAQQSLDIIIPQRFFVPADQRNGDMPQWDHGITAFLLDYDYRIFHTRDRHYYDTRHSLSLRSGFNHGAWRFRHQGYLDKTKDKLSWQSQRSWLYRPVAPLKSELQLGELFSSDPIFDSRAYTGVRLISREEMFAQNQQGYAPVIRGITAHSAQLTIKQQGMILRQMSLPGGEFEINDLHNGLQGSDLEVLIEEANGTVQHYFQPGAYVPVMLREGRTKYSLDAGKRTGQKNEHSTWFMQGTAAYGINSFLTLYGGGYTAHRAISGGMGAGVNMGAAGGISLDWLTHQANRLRYQRYRINYQKIIPQTGSSLYLRAGETIHGSDNTGQEYSPISAGRRWSGQFQQSLAGWGSLSLSYRYSERTPHQRHRRVHHRQSDKVWDAGYHGSMRYINYGVNYQYRRSGAYQREDNRISVSFSVPLEFGTQQLRSHFYYYHQAAGSGTQTSVSGTAGDDYRLNYTLHHGYQHKTGSHRRGGEIYSRYGKADLQAGFSSDGNRNVWNGGLQGSVVIHRNGVTLSRPLGESNALVDMNGVENIRLMNSNAAPTDIRGFSIIPQLSNYNKNTVYIDPETLPANADIADPVQMVIPSKGALVAVRFDVQEGHRVIYVLKTVTGSVPFGAFVQVKRPDGNTVGGIVGDDGEVYLSGLPDSGLLQVKWGSNPAQQCESEIAVPPENQWLVTMTLLCQ

Flanking regions ( +/- flanking 50bp)

GTAATCAGCAGGCCGGTGGTTTTCAATAATTAAAAAATAACTGCGGATATATGTATTTAAAAAAAACTCATCTTATATTTATGATTGTGACTGGTATATATTCCGTCAGCACATTCAGTAAACCGTATTTTAACCCGGCGGCTTTGGGCATCGGCAGCACGGATTCTACAATCGATATTGTACAGTTTCAGCAACTGAGTGAACGGCAGTTTCAGAATGAAGGCCGTTATTTTGTCTCTGTATCTGTTAATCAACAGGTTCAATCCGGACAGTGGATTGAGTTTCGCTACCATCCTGTCCGAAAACAGCTGTTACCCCTGGTTTCCCGCAGGCAGTGGCTTATGTGGGGACTACGCCCTGATGCGGGTGCTGAATTTGAGCGCATGGATGACACCGCTCAGATTGACGATATCACGCGGTTAGTCAGTGTGGTGAATGTTACATTTGATGCCGCACAGCAGTCACTGGATATTATTATTCCGCAGCGTTTTTTTGTACCGGCCGACCAGCGGAACGGGGATATGCCACAGTGGGATCACGGTATAACCGCATTTTTACTCGACTATGATTACCGCATATTTCATACACGTGACCGTCACTATTATGATACCCGGCACTCTTTATCACTGCGCAGTGGTTTTAATCACGGCGCATGGCGCTTCCGGCATCAGGGATACCTGGATAAAACGAAGGACAAACTGTCATGGCAGTCACAGCGGAGCTGGCTGTATCGCCCGGTTGCACCGCTGAAGAGTGAATTGCAACTGGGTGAATTGTTCAGCAGTGATCCTATATTTGACAGCCGTGCTTACACCGGCGTCCGTCTTATCAGCCGTGAAGAAATGTTTGCGCAGAATCAGCAGGGTTATGCACCTGTTATCAGAGGAATTACGGCACACAGTGCACAACTGACGATAAAACAGCAGGGAATGATATTGCGTCAGATGTCATTACCCGGTGGCGAGTTTGAGATTAATGACCTTCATAATGGTCTTCAGGGTTCAGATCTTGAGGTTCTGATTGAAGAGGCGAACGGCACTGTTCAGCACTACTTTCAACCCGGCGCTTATGTCCCGGTCATGCTGCGTGAGGGGCGGACAAAATACAGCCTGGATGCAGGGAAACGCACCGGACAGAAGAATGAACACAGTACCTGGTTTATGCAGGGAACGGCGGCATACGGTATCAATTCCTTCCTGACGCTGTACGGAGGCGGATATACGGCACACCGGGCAATAAGCGGCGGCATGGGCGCAGGTGTTAATATGGGAGCTGCGGGCGGGATTTCACTGGACTGGCTGACACATCAGGCAAACAGGCTTCGTTATCAGCGCTATCGTATTAATTATCAGAAAATTATCCCGCAGACAGGTTCTTCTCTTTATCTCAGGGCGGGCGAAACCATTCATGGTTCAGATAATACCGGACAGGAATATAGTCCTATATCTGCCGGGCGGCGGTGGTCGGGGCAGTTTCAACAGTCCCTGGCGGGATGGGGAAGTCTGTCTCTCAGCTATCGTTACAGTGAACGGACGCCACACCAGCGCCATCGTCGCGTACATCACCGTCAATCTGACAAAGTATGGGATGCGGGCTATCACGGCAGCATGCGTTATATCAATTACGGTGTGAACTATCAGTATCGCAGGAGTGGTGCTTATCAGCGGGAAGATAACCGGATATCTGTCTCATTTTCGGTTCCGCTGGAGTTTGGCACACAACAGTTGCGCAGCCATTTTTATTACTATCATCAGGCCGCCGGTTCCGGGACTCAAACCTCGGTAAGTGGTACTGCTGGTGATGATTATCGTCTGAACTATACATTACATCATGGCTATCAGCATAAAACGGGCTCTCATCGTCGTGGTGGCGAAATTTATTCGCGTTATGGCAAAGCGGATTTACAAGCTGGTTTCAGTTCTGACGGAAACCGTAATGTCTGGAATGGCGGTTTACAGGGAAGTGTGGTTATTCACCGTAACGGGGTAACACTGTCACGGCCGCTGGGGGAAAGCAATGCGCTGGTGGATATGAACGGAGTTGAAAATATCCGCCTTATGAACTCTAATGCGGCTCCCACGGATATCCGCGGGTTCAGCATTATTCCGCAACTGAGTAATTATAATAAGAATACTGTTTACATTGATCCGGAAACATTACCTGCTAATGCCGATATAGCCGACCCGGTTCAGATGGTTATTCCGTCAAAAGGTGCGCTGGTTGCGGTCCGGTTTGATGTTCAGGAAGGGCACCGTGTTATTTATGTCCTGAAAACAGTGACCGGCAGTGTTCCGTTCGGTGCTTTTGTGCAGGTAAAAAGACCTGACGGCAATACGGTGGGCGGGATTGTTGGTGATGATGGGGAAGTGTATCTGAGCGGTTTACCTGACAGTGGATTATTGCAGGTGAAATGGGGAAGTAACCCTGCGCAGCAGTGTGAATCAGAAATTGCTGTACCCCCTGAAAACCAGTGGCTTGTCACAATGACATTACTGTGTCAGTGAGGATTATTGAATGATTAAAGATATTATATATGGTGGCAGAATAGGTATTG