Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 46.3 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 100.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 46.3 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 100.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 46.3 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 100.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 46.3 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 46.3 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 100.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 28.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 46.6 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 87.7 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 34.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 20.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 30.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 35.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 30.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 32.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 41.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 27.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 33.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37924 0.0 914 52 5 852 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 0.0 877 49 6 861 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P30130 0.0 767 45 10 871 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 0.0 708 43 13 861 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 0.0 707 43 13 861 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P46009 0.0 697 44 15 847 3 focD Outer membrane usher protein FocD Escherichia coli
P43662 0.0 597 38 15 880 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 4.33e-165 504 35 11 837 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P33408 1.5e-149 464 35 21 818 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P53517 3.95e-146 456 34 21 878 3 afaC Outer membrane usher protein AfaC Escherichia coli
Q56983 3.56e-145 452 34 18 831 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 3.56e-145 452 34 18 831 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 7.36e-137 431 34 23 841 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 4.63e-132 418 32 20 874 3 aggC Outer membrane usher protein AggC Escherichia coli
P33388 3.01e-122 392 31 20 836 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P45998 7.72e-119 383 31 22 835 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 1.05e-117 380 31 20 814 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.55e-117 380 31 19 814 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
Q8X5K8 3.78e-117 367 38 8 518 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33129 5e-110 360 30 29 891 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P21647 5.27e-108 354 29 24 865 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P46000 2.88e-97 326 31 20 827 3 fasD Outer membrane usher protein FasD Escherichia coli
P33341 4.9e-97 325 29 22 852 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33410 2.12e-95 322 29 19 850 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 8.53e-88 302 29 14 716 3 None Outer membrane usher protein CS3-2 Escherichia coli
Q7DBJ9 3.55e-87 285 41 3 368 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 7.1e-83 274 40 3 368 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P75750 1.17e-80 280 28 27 841 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P76655 3.36e-78 273 28 27 844 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P53512 1.03e-75 266 26 21 818 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 9.49e-75 263 26 20 818 3 cssD Outer membrane usher protein CssD Escherichia coli
Q8X5K7 1.4e-74 251 38 8 372 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P53514 2.93e-74 263 26 26 869 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P77196 8.93e-74 262 26 19 827 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 5.22e-63 231 26 30 867 1 papC Outer membrane usher protein PapC Escherichia coli
P37868 2.26e-56 211 26 26 810 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 1.13e-50 194 25 30 779 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 5.19e-36 150 25 23 745 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 1.62e-26 120 25 36 820 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_03475
Feature type CDS
Gene fimD
Product Outer membrane usher protein FimD/PapC
Location 2578 - 5166 (strand: 1)
Length 2589 (nucleotides) / 862 (amino acids)

Contig

Accession ZDB_214
Length 335585 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MSNIKKVFTHTPVYFAVLAAVTCFFPAGTAGAKPSFNAAFLTDDLSDADVSDLSRFESGGYQPPGTYLVELSVNNDFVSSSEITFTELKNKEGEPYLFPCFSAETIIGFGVNIARPEELTEQDKQCFPFTEKIPGSEYHFDFQKQRLMLSFPQASLSGQARGYIPPDRWESGIPALFMNYFASGNNNSDNTSSYYVNLNSGFNLGAWQFRQSSSWNYNKSKNTSNSQWRSLMNYVQRPIIALKSQLVIGDGNSDGSVFDSAGFRGVRLFSVDNMYPDSQQGYAPTVRGMAKTDAKVVIRQNGYVIYQVYVPPGPFVINDLNPATSSGDLQVTVEEKDGTQQQYIVPYSTLPVLQREGRVKYDVMAGEFRSGNSNQDKPKFVQATLLAGLTRDISVYTGTQLADKYKSVLVGVGQNIGRFGAFSFDVTHANSELADGSNHSGQSFRFLYAKSLNTTGTTFQLLGYRYSTKGFYTLNDVAYKQMSGYEFAPDGEDGDDGKPIIINYHNLLYNKKGRFQVNISQSFDQYGSLYISGNQQSYWNRSGKDEWYQAGYSNSWNGINYSVSLSTTKALELKERDNMLSVNVSVPFSSFSSRNARSNDAFNNAYATFSATNNSGGREAYRVGVNGTLLEDRNLSYSVSQGHVSQQGYNGSAGLDYQGTYGDFGISYNYDPDQNQLNYRASGAVLLHENGLTFGQSINDTTVLVKAPGAAGVAVENYTGVKTDWRGYAIIPYASAYRNNRIALNPDSFNDNTEIKNNVQNVVPISGAVARATFDTSIGIRALLSLTHNGKPIRFGSMVQETGSQISSIADDDGRVYLTGLPLTGKLLVQWGNQPGDQCTADYDFTRQEIKGPLLRTALECK

Flanking regions ( +/- flanking 50bp)

GAATTAAGACATTCATTATTTTATTGTTGTCATGCAGGGAACAGGGTGAAATGAGTAACATCAAAAAGGTTTTCACACATACGCCGGTTTATTTTGCTGTGCTTGCCGCGGTGACGTGTTTTTTCCCTGCGGGAACCGCCGGTGCGAAACCTTCCTTTAACGCCGCGTTTTTAACCGATGACCTGTCTGACGCGGATGTCTCTGATTTATCCCGCTTTGAATCGGGTGGCTATCAGCCGCCCGGTACTTACCTGGTTGAACTGTCTGTTAATAATGACTTTGTTTCCTCCTCTGAAATCACCTTTACCGAACTGAAAAATAAAGAGGGTGAGCCTTATTTATTCCCCTGCTTCAGTGCGGAGACCATTATCGGTTTCGGGGTAAATATCGCCCGTCCGGAGGAATTAACAGAGCAGGATAAACAGTGCTTCCCGTTTACCGAAAAAATTCCCGGCTCAGAATATCACTTTGATTTTCAGAAACAGCGACTGATGCTCAGTTTCCCTCAGGCCAGTCTTTCCGGGCAGGCCCGCGGCTATATTCCGCCGGACAGATGGGAATCCGGTATTCCGGCACTGTTTATGAACTATTTCGCGTCCGGGAATAACAACTCGGATAATACCAGCAGCTACTACGTGAACCTGAACTCGGGGTTTAACCTTGGTGCGTGGCAGTTCCGTCAGTCAAGCTCCTGGAATTACAACAAAAGTAAAAACACCAGTAACAGCCAGTGGCGCAGCCTGATGAACTATGTTCAGCGGCCGATTATTGCCCTGAAAAGCCAGCTGGTTATCGGTGACGGCAACTCGGACGGCAGTGTCTTTGATTCTGCCGGGTTCCGTGGTGTGCGGCTGTTTTCTGTCGATAATATGTATCCGGACAGCCAGCAGGGCTATGCCCCGACCGTGCGCGGTATGGCAAAAACGGATGCCAAAGTGGTTATCCGCCAGAACGGCTATGTGATTTATCAGGTCTATGTCCCGCCGGGCCCGTTTGTCATAAATGACTTAAACCCGGCCACCTCCAGTGGTGACTTACAGGTCACCGTCGAGGAGAAAGACGGCACTCAGCAGCAGTATATTGTTCCCTACTCCACACTACCGGTGCTCCAGCGTGAAGGCCGTGTGAAATATGATGTGATGGCCGGGGAATTCCGCAGCGGTAACAGCAACCAGGATAAACCGAAGTTTGTCCAGGCAACCCTGCTTGCCGGTCTGACACGGGATATCTCCGTGTATACCGGGACACAGCTCGCGGATAAATATAAATCGGTACTGGTGGGTGTCGGTCAGAATATCGGCCGCTTTGGTGCCTTCTCCTTCGATGTCACCCATGCAAACAGTGAACTGGCGGACGGCTCGAATCACAGCGGGCAGTCCTTCCGTTTCCTGTACGCGAAATCCCTGAACACCACCGGGACCACGTTCCAGTTATTGGGTTACCGCTATTCCACCAAGGGCTTCTATACCTTAAACGATGTCGCGTATAAGCAGATGTCCGGCTATGAATTTGCCCCGGACGGCGAGGATGGTGATGACGGCAAGCCGATCATTATTAATTATCACAACCTGCTTTATAACAAAAAAGGGCGCTTCCAGGTCAATATCTCGCAATCATTTGACCAGTACGGCTCGCTCTATATATCCGGTAACCAGCAGTCTTACTGGAACCGCAGCGGTAAAGATGAATGGTATCAGGCCGGGTATTCCAACAGCTGGAACGGGATAAATTATTCCGTTTCCCTGAGTACCACCAAAGCGCTGGAACTCAAAGAGCGCGATAACATGCTGTCGGTGAATGTGTCCGTACCGTTCTCCTCATTCTCGTCGCGTAATGCGCGCAGTAATGATGCCTTTAATAACGCGTATGCCACCTTCTCCGCCACCAATAACTCCGGCGGCCGCGAGGCTTACCGCGTTGGCGTGAACGGCACACTGCTGGAAGACAGAAACCTGAGCTATTCCGTCTCACAGGGGCATGTCAGCCAGCAGGGTTATAACGGCTCAGCGGGCCTGGATTATCAGGGCACTTACGGCGATTTCGGGATCAGCTATAACTACGACCCGGATCAGAATCAGCTGAACTACCGGGCCTCCGGCGCAGTGCTGCTGCATGAAAACGGATTGACATTCGGCCAGTCAATCAATGACACCACCGTGCTGGTCAAAGCACCGGGTGCCGCCGGTGTGGCGGTGGAAAACTACACCGGGGTGAAAACGGACTGGCGCGGTTACGCCATTATTCCTTATGCCTCGGCATACCGTAACAACCGTATTGCCCTGAATCCGGATTCATTTAATGACAATACGGAAATTAAAAATAATGTGCAGAACGTGGTACCGATCAGCGGGGCTGTTGCCCGCGCCACGTTTGATACCAGTATCGGGATCCGGGCGCTGCTCTCGCTGACCCACAACGGCAAACCGATCCGCTTCGGCAGTATGGTGCAGGAAACCGGCTCTCAGATCAGCAGTATTGCCGATGATGACGGACGTGTGTATTTAACCGGCCTGCCGCTGACCGGGAAATTACTGGTGCAGTGGGGGAATCAGCCGGGTGACCAGTGCACCGCGGATTATGATTTTACCCGTCAGGAAATCAAAGGGCCGTTACTGCGGACCGCGCTTGAATGTAAATAGAGAGTTAATGATGAAAAAGAGATACGCAATCCCGTTATTAATGGCATTTT