PF22178


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF22178, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF22178
Description Bacteriophage T4 gp5 C-terminal trimerisation domain

Occurence in the database

PF22178 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_129 FBDBKF_16720 24632 26839 -1 vgrG VgrG protein Morganella morganii S1
1 group_129 EHELCC_10740 186932 189139 1 vgrG VgrG protein Morganella morganii S2
2 group_129 NLDBIP_11085 165203 167410 1 vgrG VgrG protein Morganella morganii S4
3 group_129 LHKJJB_10270 24118 26325 -1 vgrG VgrG protein Morganella morganii S3
4 group_129 HKOGLL_16435 24127 26334 -1 vgrG VgrG protein Morganella morganii S5
5 group_3684 F4V73_RS00065 16211 18559 -1 vgrG type VI secretion system tip protein VgrG Morganella psychrotolerans
6 group_129 F4V73_RS05135 1095001 1096956 -1 tssI type VI secretion system tip protein TssI/VgrG Morganella psychrotolerans
7 group_3684 F4V73_RS06965 1442836 1444776 -1 tssI type VI secretion system tip protein TssI/VgrG Morganella psychrotolerans
8 group_3684 F4V73_RS09330 1958034 1960634 -1 tssI type VI secretion system tip protein TssI/VgrG Morganella psychrotolerans
9 group_129 PMI_RS01000 245952 247940 1 tssI type VI secretion system tip protein TssI/VgrG Proteus mirabilis HI4320
10 group_129 PMI_RS03695 832312 834462 1 tssI type VI secretion system tip protein TssI/VgrG Proteus mirabilis HI4320
11 group_129 PMI_RS05425 1186581 1188683 1 tssI type VI secretion system tip protein TssI/VgrG Proteus mirabilis HI4320
12 group_129 PMI_RS06420 1407264 1409237 -1 tssI type VI secretion system tip protein TssI/VgrG Proteus mirabilis HI4320
13 group_129 PMI_RS14790 3279521 3281692 1 tssI type VI secretion system tip protein TssI/VgrG Proteus mirabilis HI4320