Orthogroup:group_3687


Homologs in group_3687

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS05135 F4V73_RS05135 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
PMI_RS01000 PMI_RS01000 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG
PMI_RS06420 PMI_RS06420 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG

Distribution of group_3687 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3687 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3687

Orthogroup content: 3 members

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This page summarizes the annotation of all members of the orthologous group group_3687.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssI 3

Product

# Product Occurence
1 type VI secretion system tip protein TssI/VgrG 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3501 3 UXR Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11904 3 type VI secretion system secreted protein VgrG Bacterial secretion system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04717 3 Type VI secretion system/phage-baseplate injector OB domain
PF05954 3 Phage tail baseplate hub (GPD)
PF22178 3 Bacteriophage T4 gp5 C-terminal trimerisation domain

Annotations of the 17 SwissProt hits

Annotation Number of occurrences
Actin cross-linking toxin VgrG1 2
Putative type VI secretion system protein VgrGA 1
Putative type VI secretion system protein VgrGB 1
Type VI secretion system spike protein VgrG1 2
Type VI secretion system spike protein VgrG1a 1
Type VI secretion system spike protein VgrG1b 1
Type VI secretion system spike protein VgrG1c 1
Type VI secretion system spike protein VgrG2 2
Type VI secretion system spike protein VgrG2a 1
Type VI secretion system spike protein VgrG2b 1
Type VI secretion system spike protein VgrG3 2
Type VI secretion system spike protein VgrG4b 1
Type VI secretion system spike protein VgrG5 1

Protein length

Min length 651
Max length 662
Mean length (sd) 656.7 (5.5)
Median length 657.0

Protein length distribution