Homologs in group_3684

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS06965 F4V73_RS06965 24.1 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS09330 F4V73_RS09330 30.6 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS16810 F4V73_RS16810 23.7 Morganella psychrotolerans vgrG type VI secretion system Vgr family protein

Distribution of the homologs in the orthogroup group_3684

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3684

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I737 2.19e-108 350 36 7 506 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F3 3.25e-106 344 33 11 649 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I741 3.41e-106 342 36 8 521 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HYC3 1.54e-70 250 31 15 606 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
E0SIS4 2e-67 238 30 15 538 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
E0SAL0 3.74e-66 234 29 13 537 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
Q9KNE7 9.16e-64 229 29 7 473 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
K7WKL8 7.76e-63 226 28 10 516 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
A0KJB0 3.1e-62 226 27 10 516 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q0PZH5 6.79e-62 224 27 10 516 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
Q9KS45 2.72e-61 228 29 9 478 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A0H3AIG7 3.12e-61 227 29 9 478 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q0PZF7 1.12e-60 220 27 10 516 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
Q9HU93 4.09e-58 215 30 12 521 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3K1 1.31e-55 208 32 7 411 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 8.52e-55 207 32 7 411 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KN42 6.62e-54 205 28 7 456 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A0H2WHF1 1.58e-09 65 27 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 5.79e-09 63 27 0 223 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 2.45e-08 61 25 1 260 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 3.84e-08 60 26 0 235 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 4.6e-08 60 24 1 278 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 5.89e-08 60 26 0 230 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 1.08e-07 59 26 0 217 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 1.65e-07 58 27 3 244 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 2.24e-05 52 26 1 210 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 6.88e-05 50 26 0 216 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H2WHF1 0.000105 49 26 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia mallei (strain ATCC 23344)
A0A0H3HIJ5 6.84e-09 63 26 0 241 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 2.02e-08 62 27 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 3.2e-08 61 27 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 3.25e-08 61 26 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 3.76e-08 60 26 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 5.02e-08 60 27 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 6e-08 60 26 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 1.15e-07 59 26 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 2.06e-07 58 27 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 7.27e-07 57 26 0 240 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 1.63e-06 55 25 0 241 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 2.52e-06 55 28 2 223 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 2.94e-06 54 26 0 225 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 3.92e-06 54 25 1 250 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 7.75e-06 53 25 0 241 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 1.03e-05 53 25 0 225 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 6.78e-05 50 25 0 214 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 7.32e-05 50 25 0 235 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 0.000203 48 27 0 216 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 0.000338 48 27 0 147 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
A0A0H3HIJ5 0.000727 47 27 0 216 1 bpaC Autotransporter adhesin BpaC Burkholderia pseudomallei (strain 1026b)
O13736 3.92e-05 51 27 4 185 1 sla1 Actin cytoskeleton-regulatory complex protein sla1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O13736 4.19e-05 51 27 4 198 1 sla1 Actin cytoskeleton-regulatory complex protein sla1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00065
Feature type CDS
Gene vgrG
Product type VI secretion system tip protein VgrG
Location 16211 - 18559 (strand: -1)
Length 2349 (nucleotides) / 782 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3684
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041079 type VI secretion system tip protein VgrG VF1036 Effector delivery system

Protein Sequence

MPLIEIDNEKLTGTDAFPLSFTTQEHLSQDPVYHLTFQVADADLDVGSLLGEKVTVSVELPDLGGSRTFSTYVVAGGDEGQHQDQFVYQLELRTWLWFLMQNRNCRIFQNCNVLAIIKEIFSRYSVANYRIETETVYPEKEYCVQFGESDFNFVSRLMEDAGIWYYIDHSEGQDVMVITDRQQFAPLRDGYETLSFLPDSEEHRAIREGIQRIRRNRRIHSSEVVLRDFDFLKPRHSLQTQAEEKRAHLQGVPLEWYDYAAGYDDVQQGEIIARLRLEAIRCENQILQGESNATGLKIGHSFELNQHPDSTRNRGFKLLGCDYTFLQDGPDSSSRGRSVTCRFRALNDDEIYRPGCLTPRPQLPGIQSATVVGAPDSEVHTDKYARIRVHFHWDRYKTTEEDSSCWIRVVQAWAGKGWGVLAMPRVGQEVLVTYIDGDLDRPMVTGIVYNGENPPPYQLPEHINYSGLVSRSLRNGMPQHASQITFDDKRYNERVMVHAERDMQRTVERNSASTVGQDSYEVVKRTVTDWFKNHVSYKDSNFSFTGFNFSATGVSVSLTGQSVGMTGSSVSLTGTGTSFTGVSTSFTGISTSFTGRSTSFTGSSDSSTGVSSSRTGSSSSFTGTSNSMTGSSHSMTGMSSSMTGCSTSKTGESHSSTGSSVSHTGTSVSCTGSSTSTTGVSVSTTGSSTSTTGSSVSTTGSSVGTTGSSVSTTGSSVSTTGSSVSATGSSVSATGSSVSTTGSSVSSKGSDISVTGFSFSYTGVGYSQTGVDLKTVGMQSKN

Flanking regions ( +/- flanking 50bp)

CAGCCTGATGCGATTAACACAACACACGACTAAACGTAAGGATGAGTGTTATGCCACTGATTGAAATTGACAATGAAAAGCTGACCGGTACAGATGCATTTCCGCTCAGTTTTACCACGCAAGAGCATCTTTCACAGGACCCGGTCTATCATCTGACATTTCAGGTTGCCGATGCGGATTTGGATGTCGGCTCTCTGCTGGGTGAAAAAGTGACCGTTTCTGTTGAGCTTCCCGATTTGGGCGGCAGCCGTACTTTTTCAACCTATGTTGTTGCCGGGGGAGATGAAGGGCAGCATCAGGATCAATTTGTCTATCAGTTAGAGTTGCGGACCTGGCTATGGTTCTTAATGCAGAACCGCAACTGTCGGATCTTCCAGAACTGCAATGTTCTCGCCATTATCAAAGAAATTTTTTCCCGTTACAGTGTGGCAAATTACCGTATTGAAACAGAGACTGTCTATCCGGAAAAAGAGTATTGCGTACAGTTTGGTGAAAGTGACTTCAATTTTGTCAGCCGCCTGATGGAAGATGCCGGGATCTGGTATTACATCGATCACAGCGAAGGACAGGATGTTATGGTCATCACCGATCGCCAGCAATTCGCACCACTTCGCGACGGTTATGAAACCCTGAGTTTCTTACCGGACAGCGAAGAGCACCGGGCTATCCGTGAAGGTATCCAGCGCATCCGCCGGAACCGGCGGATCCACTCAAGTGAAGTGGTATTGCGTGACTTTGACTTTCTCAAACCCCGCCATTCATTACAAACACAGGCTGAAGAAAAACGCGCACATTTACAGGGCGTTCCGCTGGAATGGTATGACTATGCCGCCGGTTATGATGATGTGCAACAGGGGGAAATTATCGCCCGTCTGCGCCTGGAAGCTATCCGCTGTGAAAACCAGATATTGCAGGGTGAAAGTAATGCAACCGGTCTGAAAATCGGTCATTCGTTTGAACTGAACCAACACCCCGACTCAACCCGCAACCGGGGATTTAAATTACTCGGATGTGATTACACTTTCCTTCAGGACGGACCAGACAGCAGTAGTCGCGGACGCAGTGTGACCTGCCGGTTCCGGGCGCTGAATGATGATGAAATTTACCGCCCCGGATGCCTGACACCCCGCCCGCAATTGCCCGGAATTCAGAGTGCCACCGTTGTTGGTGCGCCGGATTCTGAAGTACATACCGATAAATATGCGCGTATCCGTGTGCATTTTCACTGGGATCGTTACAAAACCACCGAAGAAGACAGCTCCTGCTGGATACGGGTGGTACAGGCATGGGCAGGCAAAGGCTGGGGAGTGCTGGCGATGCCCCGTGTTGGTCAGGAAGTTCTGGTGACCTACATTGATGGCGACCTGGACAGACCAATGGTGACCGGCATTGTGTATAACGGCGAAAACCCGCCGCCGTATCAGTTACCGGAGCATATTAACTATTCAGGTCTGGTATCCCGTTCATTACGTAACGGTATGCCGCAACATGCCAGCCAGATTACCTTTGATGACAAGCGCTATAACGAGCGGGTGATGGTTCATGCCGAGCGGGACATGCAGCGCACGGTTGAGCGTAATTCCGCGTCAACGGTCGGACAGGACAGCTATGAAGTCGTGAAGCGCACGGTGACAGACTGGTTTAAAAATCACGTCTCTTATAAAGACAGCAATTTCTCTTTTACCGGTTTTAATTTTAGTGCCACCGGCGTGAGTGTCAGCCTGACCGGTCAGAGTGTCGGCATGACCGGATCCAGTGTCTCACTGACCGGTACCGGTACCTCATTTACCGGTGTCAGCACCTCATTTACCGGTATCAGCACGTCATTTACCGGGCGATCCACCTCATTTACCGGCAGCAGTGATTCCTCAACCGGCGTCAGTAGTTCACGCACAGGTTCCAGCTCCTCATTTACAGGAACAAGTAATTCAATGACCGGCAGCTCTCATAGCATGACCGGTATGAGCAGCAGCATGACCGGATGCAGCACATCCAAAACCGGAGAAAGCCACAGTTCCACCGGCAGCAGCGTTTCACACACGGGGACCAGTGTCAGTTGTACCGGAAGCAGTACATCGACTACAGGAGTCAGTGTCAGTACAACCGGCAGCAGCACCAGCACCACCGGCAGCAGTGTCAGCACCACCGGCAGTAGTGTCGGTACCACCGGCAGTAGTGTCAGTACCACCGGCAGCAGTGTATCGACAACAGGCAGCAGCGTTTCCGCAACCGGCAGCAGTGTTTCTGCAACCGGCAGTTCTGTCTCCACGACCGGAAGCTCTGTATCCAGCAAGGGTTCTGATATCAGTGTCACCGGATTCTCCTTCAGCTATACCGGCGTAGGGTATTCACAAACCGGTGTCGACCTGAAAACGGTCGGAATGCAGAGTAAAAATTAAAAGGAAGGCATGATGCGTATTATTCGTCCTCAGCAACTTGCTGTACTCAG