Homologs in group_439

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6 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00065 F4V73_RS00065 23.6 Morganella psychrotolerans vgrG type VI secretion system tip protein VgrG
F4V73_RS06965 F4V73_RS06965 23.4 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS09330 F4V73_RS09330 28.3 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS16810 F4V73_RS16810 22.3 Morganella psychrotolerans vgrG type VI secretion system Vgr family protein
PMI_RS03695 PMI_RS03695 58.5 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG
PMI_RS05425 PMI_RS05425 59.1 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG

Distribution of the homologs in the orthogroup group_439

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_439

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0SAL0 1.39e-133 410 36 10 636 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
E0SIS4 2.73e-133 410 36 10 636 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
Q0PZF7 2.74e-131 407 36 14 647 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
Q0PZH5 4.63e-130 404 35 15 700 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
K7WKL8 1.28e-129 402 36 12 639 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
A0KJB0 1.68e-128 401 36 13 646 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q9KNE7 1.99e-111 355 34 12 644 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KN42 9.53e-104 343 32 10 689 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KS45 2.42e-103 345 34 14 644 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A0H3AIG7 3.16e-100 335 36 11 561 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9I3K1 2.1e-93 311 36 10 492 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 6.12e-92 311 36 10 492 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 1.36e-90 302 31 10 593 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 4.53e-06 53 26 3 169 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F3 7.49e-89 297 30 14 653 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HYC3 4.65e-82 280 28 14 643 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I741 5.31e-79 268 30 11 554 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HU93 1.66e-75 262 30 17 646 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14790
Feature type CDS
Gene tssI
Product type VI secretion system tip protein TssI/VgrG
Location 3279521 - 3281692 (strand: 1)
Length 2172 (nucleotides) / 723 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_439
Orthogroup size 7
N. genomes 2

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MSITNSKKYQRLGDKDGNSLSGDKTLTHGGGRTYAQDLALQEQHRQLIEKILSGDMQSGLVFTCQIGGLPEETFQVTQFDLQEGISQLFTLSIQAVSPLSEIDFNDVLGMASSLTVKRDGHILRTVQGILAAAEQGNTDGVKTWYQFVIRPEMWVMTLKQDSRIFQDTTVPHILETLLNESHIKYDKQLYHPEEHLQRAYTTQKRETMYDFWCRLAAEEGINFWFEEGPQLFYSDRHLGMRAGISLTYNPQSDTDITDSTATTWRYVEQLCSDIRVDKDYNQLRPSYPLSHQVTGEVHQQHEIFESYGRFEEDAQGQPFNQIRYEQSQNQRQVGSATTNCIELAPGRIFTLSNHPSARMNTTWQVISISHHGVQPLADNSGGEGTQLSNQLSFVPSTQEWRPPYRFKPTADGDELATVVGPPGEEIYTNEQGAVTVYFHWDRRGKPDHSASCWVRVAQGWNGDGFGFMAIPRVGQEVIISYLNNDIDKPIITGCTYNGRNRSPIDLPKHKTRTTFRTKTHKGDGFNELRFEDKNGDEEIYLHAQRDNNIHINHNKTQYVGHDDSHTVANNRKHEVCHDEFIHIVNEQTVQVDVNQFEQIGKDRITRIDNSWKEVIHASHFQEIGENKQCDIQNDYTLKAAGGIHTHTKIHTLQASETVIIKGKAGSIQLDAQGVTITGKILLKGDVSITGGAPEVVTQLEAAVNEGLPLAEDCRAKAMKKGTA

Flanking regions ( +/- flanking 50bp)

AGGGGCTCGTTTACCGTTTTAGTCTCCTACTTCCCGTGAAGGATTATTGGATGTCTATAACAAATTCAAAAAAATATCAAAGGCTGGGTGATAAGGATGGCAACTCACTGAGTGGGGATAAGACATTAACCCATGGCGGTGGCAGAACATACGCGCAAGATCTCGCTTTACAAGAGCAACATAGACAACTCATAGAGAAGATCTTAAGTGGCGACATGCAAAGTGGCTTAGTGTTTACTTGTCAGATTGGTGGATTACCCGAAGAGACTTTCCAAGTCACGCAATTCGATTTACAAGAAGGGATCTCACAACTTTTCACTCTCTCCATCCAAGCCGTCAGTCCACTCTCGGAAATTGATTTTAATGATGTGTTAGGCATGGCTTCCAGTTTGACAGTAAAGCGAGATGGTCACATTCTGCGTACAGTACAAGGTATCTTAGCGGCGGCAGAGCAAGGGAATACCGATGGGGTAAAAACCTGGTATCAATTTGTGATACGTCCTGAAATGTGGGTAATGACCCTCAAACAAGATAGTCGTATTTTTCAAGATACCACCGTTCCTCATATTCTTGAGACATTACTCAATGAGTCTCACATTAAATATGATAAACAGCTTTATCACCCAGAAGAGCATTTGCAGCGCGCCTATACCACTCAAAAACGAGAAACAATGTATGACTTTTGGTGCCGTTTAGCCGCAGAAGAAGGGATTAATTTTTGGTTTGAAGAAGGCCCACAGTTATTTTATAGCGACCGACATTTGGGCATGAGAGCGGGGATATCCTTAACCTATAACCCACAATCGGATACAGATATCACCGATAGCACCGCCACAACGTGGCGCTATGTTGAACAACTCTGTAGCGATATTCGCGTTGATAAAGATTACAATCAACTTAGACCTTCCTACCCCTTAAGCCATCAAGTCACAGGAGAGGTTCATCAACAACATGAAATATTTGAAAGTTATGGACGCTTTGAAGAAGATGCTCAGGGACAACCCTTTAATCAGATACGTTATGAACAATCACAAAATCAGCGTCAAGTAGGCTCTGCGACCACAAACTGCATTGAATTAGCGCCGGGGCGTATTTTTACCTTGTCTAACCACCCCAGTGCACGCATGAACACCACATGGCAGGTGATTAGTATCTCACATCACGGTGTGCAACCTCTTGCCGACAACAGTGGCGGTGAAGGAACGCAATTGAGTAATCAGCTTTCCTTTGTGCCGAGTACTCAAGAGTGGCGCCCGCCTTACCGTTTTAAACCTACCGCCGATGGTGATGAATTAGCCACTGTCGTCGGCCCGCCGGGCGAAGAAATCTATACCAATGAGCAAGGTGCCGTTACGGTCTATTTTCATTGGGATAGGCGTGGTAAACCAGACCATAGCGCATCATGCTGGGTAAGAGTCGCTCAAGGTTGGAATGGGGACGGATTTGGCTTTATGGCTATTCCTCGTGTTGGGCAAGAAGTGATTATCTCTTATTTAAACAATGATATAGATAAACCGATTATCACCGGATGTACCTATAATGGTCGCAATCGTTCCCCCATTGATTTACCTAAACATAAAACCCGTACCACATTTCGCACCAAAACCCATAAAGGAGACGGGTTTAATGAATTGCGCTTTGAGGATAAAAATGGCGATGAGGAAATTTATCTTCATGCGCAACGCGATAATAATATTCATATTAATCATAATAAAACCCAATACGTTGGGCATGATGATAGCCATACTGTCGCCAATAACCGTAAGCATGAAGTGTGTCATGACGAATTTATCCACATCGTCAATGAGCAAACAGTACAGGTTGATGTCAATCAATTTGAACAAATAGGGAAAGACCGTATCACACGCATTGACAATAGTTGGAAAGAAGTTATCCACGCCAGTCACTTTCAGGAAATCGGGGAAAACAAGCAGTGTGATATCCAAAATGATTATACCCTGAAAGCCGCAGGGGGTATCCATACCCATACCAAAATCCACACCTTGCAAGCCAGTGAAACGGTCATTATCAAAGGCAAGGCTGGGTCGATTCAATTGGATGCACAAGGTGTGACTATTACAGGTAAAATTCTGCTCAAAGGCGATGTGTCAATAACGGGGGGCGCCCCAGAAGTGGTTACTCAGTTAGAAGCGGCGGTTAATGAAGGGTTACCATTAGCTGAGGATTGCCGTGCGAAAGCGATGAAAAAAGGAACGGCCTAATGCTCTTGAGTCCAAATCCCCTCTATAAAGCGTATTGGGTTGCTCAATGC