Homologs in group_3687

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS01000 PMI_RS01000 67.1 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG
PMI_RS06420 PMI_RS06420 64.1 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG

Distribution of the homologs in the orthogroup group_3687

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3687

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q0PZH5 4.05e-161 481 40 7 612 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
Q0PZF7 1.22e-158 475 38 10 667 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
K7WKL8 5.59e-157 471 39 7 612 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
A0KJB0 1.22e-153 464 38 8 624 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
E0SAL0 8e-135 411 37 9 618 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
E0SIS4 4.06e-134 409 37 9 618 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
Q9KNE7 4.42e-133 409 36 13 675 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KS45 1.93e-131 418 37 15 686 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A0H3AIG7 4.39e-126 402 36 16 686 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9KN42 4.7e-121 387 36 9 624 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9HU93 4.78e-89 297 31 11 629 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3K1 3.84e-88 295 35 9 487 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HYC3 7.58e-88 294 31 13 612 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 2.21e-87 297 35 9 487 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 3.72e-84 283 31 14 569 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F3 2.09e-83 280 29 15 680 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I741 2.13e-81 273 30 15 634 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05135
Feature type CDS
Gene tssI
Product type VI secretion system tip protein TssI/VgrG
Location 1095001 - 1096956 (strand: -1)
Length 1956 (nucleotides) / 651 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3687
Orthogroup size 3
N. genomes 2

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MSGLVFTCKIGRLPEQTFQVTEFTLSEALSSLFTLSVSAVSLLPSIPFDDHLGSAASLTVIRDGVKVRTVQGLLASAEQGNTDGNKTWYHFIIRPEMWVMSLNQDSRIFQKQSVPDILATLLNEAHVKCDKKFYQDELHQKRDYITQKRESAYEFWCRLAYEEGINFWFEEGPKLFYSDNHLGMTAGIHLIYNPQADTDTRDSTASSWRYTQTLCSDVFIQKDYNPDRPSYPFQHQVTGKVHKQHAVYESYGRCRDDETGKPFTQLRYEQSQNQRQTGAANTNCFSLRPGKIFTLNNHPSAAMNQSWQVISVSHRGVQPLADNGGGDGTQFSNTVRFIPGTQEWRPPFRFRPQADGDELATVVGPEGEEIYTNEQGAVKVYFHWDRCGQPNHSASCWVRVAMGWNGGGYGFMSIPRIGQEVIISYLNGDIDKPVITGCTYNGRNRPPLDLPKEKTRTTFRTQTHKGDGFNELHFDDLAGEEEIYLHAQKNMNVHVEHDVTWHIQHDLKQRIDNNSHTELAGDEHVIIKGSQKHQTTGDVSLHIKGEQHTRVDKNLVTESGQQTHHLSDGKIIIEAGTEITLKVGDSFIRITPGAIFTSGNLNIGDSGPGTGAPVTLMSPEGVLPAKAPYPVKKYCAVAAQTAGSWIIKSGE

Flanking regions ( +/- flanking 50bp)

GAGACGCGACAGTATCAAAAACTGCCGGTTCACTGCTGCCCGGCGGTTCGTTGTCCGGTCTGGTATTTACCTGTAAAATCGGGCGGTTACCGGAGCAGACCTTTCAGGTCACTGAATTCACCCTCAGCGAAGCACTCTCCTCCCTGTTTACCCTGTCAGTCAGTGCCGTCAGTTTGCTGCCCTCCATTCCTTTTGATGATCATCTCGGCTCGGCGGCATCACTGACGGTGATCCGTGACGGCGTAAAAGTCCGTACCGTACAGGGGCTGCTGGCGTCGGCGGAGCAGGGAAATACGGACGGTAACAAAACCTGGTATCATTTTATTATCCGCCCGGAAATGTGGGTGATGAGCCTGAATCAGGACAGCCGGATTTTTCAGAAACAGTCTGTGCCGGACATTCTGGCGACACTGCTGAATGAAGCGCATGTCAAATGTGATAAAAAATTCTATCAGGATGAACTGCATCAGAAGCGGGATTACATCACGCAAAAACGCGAATCTGCTTATGAATTTTGGTGTCGCCTGGCGTATGAAGAGGGGATTAATTTCTGGTTTGAAGAGGGGCCGAAACTCTTTTACAGCGATAATCACCTTGGCATGACCGCCGGTATTCATCTGATCTATAACCCGCAGGCAGACACAGATACCCGTGACAGCACCGCATCCTCCTGGCGTTACACACAAACACTGTGCAGTGATGTGTTTATCCAGAAAGATTACAACCCGGACCGTCCGTCCTACCCGTTTCAGCATCAGGTCACGGGTAAGGTGCATAAACAGCACGCTGTGTACGAAAGTTACGGTCGTTGCCGCGATGACGAGACCGGCAAACCCTTTACTCAGCTGCGCTACGAGCAATCTCAAAACCAACGGCAGACCGGAGCCGCCAATACCAACTGTTTTTCCCTCAGACCCGGTAAAATATTCACGCTGAATAATCACCCGTCGGCGGCGATGAATCAGTCATGGCAGGTGATCAGCGTCAGCCATCGCGGGGTGCAGCCGCTGGCGGATAACGGCGGCGGGGACGGTACGCAGTTTTCCAACACCGTCCGGTTTATCCCGGGAACTCAGGAATGGCGTCCGCCGTTTCGCTTCCGCCCTCAGGCGGACGGTGACGAGCTGGCAACGGTTGTCGGGCCGGAGGGCGAGGAAATTTACACCAATGAGCAGGGGGCGGTAAAAGTGTATTTTCACTGGGATCGCTGCGGTCAGCCCAATCACAGCGCCTCCTGCTGGGTTCGGGTGGCAATGGGCTGGAATGGCGGGGGATATGGGTTTATGTCGATCCCGCGTATTGGTCAGGAAGTCATTATTTCTTATCTGAACGGCGATATCGATAAACCGGTTATTACCGGCTGTACCTACAACGGGCGAAATCGCCCGCCACTGGATTTACCAAAAGAGAAAACCCGCACTACGTTTCGTACACAAACTCATAAAGGTGACGGCTTTAACGAGCTGCATTTTGACGATTTAGCCGGGGAAGAAGAAATTTATCTGCATGCACAGAAAAATATGAATGTGCATGTTGAACATGATGTCACCTGGCATATACAGCACGATCTGAAACAGAGAATTGATAACAACAGTCACACGGAACTGGCGGGTGATGAGCACGTCATAATCAAAGGCTCACAGAAACATCAGACAACCGGTGATGTTTCGCTGCATATCAAAGGTGAACAGCACACCAGGGTGGATAAAAATCTGGTCACCGAAAGCGGGCAGCAAACCCACCACCTCAGTGATGGAAAAATCATTATTGAGGCGGGAACGGAAATCACCCTGAAAGTCGGTGATAGCTTTATCCGCATCACACCGGGAGCGATTTTTACCTCCGGAAACCTGAATATCGGTGACAGCGGTCCGGGCACCGGCGCCCCGGTAACACTGATGTCGCCGGAAGGTGTTTTGCCTGCCAAAGCACCGTATCCGGTGAAAAAATATTGTGCGGTTGCGGCTCAGACAGCAGGAAGCTGGATTATAAAATCAGGAGAATAAAATGGCCGGACTGAACACGACACAATGGCTGACAGAAACCGATCCTGCAC