Homologs in group_3687

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2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS05135 F4V73_RS05135 64.1 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
PMI_RS01000 PMI_RS01000 61.5 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG

Distribution of the homologs in the orthogroup group_3687

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3687

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q0PZF7 3.5e-151 456 39 5 607 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
Q0PZH5 2.79e-148 448 38 5 614 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
K7WKL8 4.83e-148 448 38 5 602 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
A0KJB0 2.16e-147 448 38 6 614 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
E0SAL0 1.86e-129 398 36 7 623 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
Q9KNE7 4.83e-129 399 34 9 690 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
E0SIS4 2.81e-126 389 35 7 623 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
Q9KS45 3.81e-123 396 36 6 621 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A0H3AIG7 2.75e-119 384 35 7 621 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9KN42 1.93e-116 375 35 6 609 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9HU93 2.93e-86 290 29 10 613 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HYC3 1.06e-85 288 29 11 628 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I741 5.37e-85 283 30 14 624 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 1.12e-84 284 30 11 580 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3K1 1.05e-83 284 33 6 491 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 5.16e-83 285 34 6 491 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F3 2.27e-82 278 29 8 584 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06420
Feature type CDS
Gene tssI
Product type VI secretion system tip protein TssI/VgrG
Location 1407264 - 1409237 (strand: -1)
Length 1974 (nucleotides) / 657 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3687
Orthogroup size 3
N. genomes 2

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MDGLVFTCQFKGIPEETFTVTEFQLTEHLSELFTLSLTAVSSLPSICFDDMLGFACSLTVTRNGKPIRTVRGLLASAEQQNTDGNQTWYHFIIRPEIWVMSLGQNSRIFRQITVPDLLQQLLFESHIKADCKLYAEDAYPKRDYITQKRESDYQFFCRLAAEEGISFWFEDAGIEPRMFYSDSHLGMTADIDLIYNPQYETDTRDHTAYHWRYRESLLSDKILYKDYNSKRPSYPLESKIEGEIHNQHPFYESYGRFQTQDDADRYTKIRMEEIQQQRCVGNALTNCFALMPGKIFSLSSHPCSNMNRRWQVIAITHHGTQPLADNREGQGTTLSNNLTFIPDNLNWRPPFIHKPTADGDELATVVGPEGEEIYTNEEGAVQVYFHWDRMREPELGSSCWVRVAQGWNGNGYGFMAIPRIGQEVLISYLNGDIDRPIISGCTYNGRNTPPLNLPYEMTRTTFKTKTHKGEGFNELRFDDKAGREEIYLHAQHDMNAHIEHNAHFHIQHDAKKRINNDQFTEIAGNDHFILKGSQKNHITGNVSLHIEGDEKTKVNGNAVHESTLQTYFVSGGKIVLDAGTEITLKVGESFIRITPNMIFTSNNLVVGGGSAGSGTSIDLELPQGVPPLELSPYPVKKYCAVAAQHSGGIIIKPNEDE

Flanking regions ( +/- flanking 50bp)

ATAGAGTTACTTGTTAAATTTTTTCTTATTATTCGCAAGGAGAAATAGTCATGGATGGATTAGTTTTTACCTGTCAATTTAAAGGAATTCCTGAAGAAACATTCACTGTGACAGAATTTCAACTGACTGAGCATTTATCTGAGTTATTTACACTTTCTTTAACTGCGGTAAGTTCATTACCGTCTATCTGTTTTGATGATATGTTGGGGTTTGCTTGTTCCTTAACGGTTACGCGCAATGGTAAACCTATTCGTACTGTACGTGGGCTATTAGCTAGTGCGGAGCAACAAAATACAGATGGTAATCAAACGTGGTATCACTTTATTATTCGACCTGAAATTTGGGTTATGTCTTTAGGGCAAAACAGTCGAATTTTTCGACAAATAACGGTGCCTGACTTACTTCAGCAATTATTATTTGAGTCTCATATTAAAGCGGATTGCAAACTCTATGCTGAGGATGCTTATCCTAAGCGTGATTATATAACACAAAAGCGTGAATCAGATTATCAGTTTTTTTGCCGTTTAGCTGCAGAAGAGGGAATAAGCTTTTGGTTTGAAGATGCAGGAATTGAGCCACGGATGTTTTACAGCGATTCTCACTTAGGTATGACGGCAGATATTGACTTAATTTACAACCCACAATATGAAACAGATACTAGAGATCATACTGCATATCATTGGCGTTATAGAGAGTCACTGCTTTCAGATAAAATTCTTTACAAAGATTATAATTCTAAACGTCCTTCTTATCCCCTTGAAAGTAAAATAGAAGGGGAAATACATAATCAGCATCCATTTTATGAAAGTTATGGGCGTTTTCAGACGCAAGATGATGCAGATCGTTATACCAAAATTCGAATGGAAGAGATACAACAACAACGTTGCGTCGGCAATGCATTAACTAATTGTTTTGCTTTGATGCCAGGAAAAATTTTTTCGTTATCTTCTCACCCATGCTCAAATATGAATCGCCGTTGGCAAGTCATTGCTATTACTCATCACGGCACTCAACCCTTAGCTGATAATAGGGAAGGGCAAGGAACAACATTATCGAATAATTTAACCTTTATTCCTGATAATTTAAATTGGCGCCCGCCTTTTATTCATAAACCAACAGCTGATGGCGATGAATTAGCCACAGTAGTTGGCCCTGAAGGTGAAGAAATCTATACCAATGAAGAAGGGGCTGTACAAGTTTATTTTCATTGGGATCGCATGCGAGAACCAGAATTAGGAAGCTCATGTTGGGTTCGGGTAGCGCAGGGATGGAATGGTAACGGTTATGGCTTTATGGCAATACCTAGGATTGGACAAGAAGTGCTTATCAGTTATCTAAATGGAGATATAGATAGACCTATAATTTCAGGCTGTACATATAATGGACGCAATACTCCGCCACTAAACCTACCTTATGAGATGACGCGTACTACGTTTAAAACAAAAACGCATAAAGGAGAAGGGTTTAACGAGTTACGCTTTGATGATAAAGCAGGCCGAGAAGAAATCTATCTTCATGCACAACACGATATGAATGCTCATATTGAACATAACGCACATTTCCATATTCAGCATGATGCAAAAAAACGGATTAATAATGATCAATTTACCGAAATCGCAGGTAATGATCACTTTATTTTAAAAGGCTCACAAAAAAATCATATCACTGGAAATGTATCATTACATATTGAAGGTGATGAAAAGACGAAAGTAAATGGAAATGCGGTGCATGAAAGCACTCTGCAAACTTATTTTGTGAGTGGCGGTAAAATTGTGCTTGATGCGGGGACAGAAATCACCCTTAAAGTGGGAGAGAGTTTTATACGGATCACTCCCAATATGATATTTACTTCGAATAATTTGGTCGTCGGTGGTGGTAGTGCAGGAAGTGGGACTTCTATCGATTTGGAGCTACCGCAAGGCGTCCCTCCTTTAGAGTTATCTCCGTATCCTGTAAAAAAATACTGTGCAGTAGCAGCACAGCACTCAGGGGGAATAATTATAAAACCAAATGAGGATGAATAATGTCACTGACATGGACTTCATGGTTAACAAATACCATTCAAAGTGATGTG