Homologs in group_439

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6 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00065 F4V73_RS00065 25.0 Morganella psychrotolerans vgrG type VI secretion system tip protein VgrG
F4V73_RS06965 F4V73_RS06965 21.4 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS09330 F4V73_RS09330 28.4 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS16810 F4V73_RS16810 23.0 Morganella psychrotolerans vgrG type VI secretion system Vgr family protein
PMI_RS03695 PMI_RS03695 90.8 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG
PMI_RS14790 PMI_RS14790 59.1 Proteus mirabilis HI4320 tssI type VI secretion system tip protein TssI/VgrG

Distribution of the homologs in the orthogroup group_439

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_439

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0SAL0 3.26e-148 447 40 8 615 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
E0SIS4 3.04e-144 437 40 8 615 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
K7WKL8 3.03e-135 416 38 10 619 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
Q0PZH5 1.16e-133 412 37 10 620 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
Q0PZF7 4.95e-133 410 37 10 620 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
A0KJB0 3.28e-130 405 36 9 630 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q9KNE7 4.18e-111 354 35 11 623 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KN42 3.4e-109 357 34 9 622 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KS45 3.98e-109 360 34 11 623 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A0H3AIG7 4.2e-104 345 34 9 594 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9I741 1.3e-88 293 31 9 605 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HYC3 4.43e-87 293 31 17 635 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 2.45e-86 290 31 8 562 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I737 1.22e-06 55 25 2 125 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F3 3.73e-85 286 31 7 554 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3K1 7.4e-82 280 34 6 474 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 4.8e-81 281 34 7 487 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HU93 3.76e-79 271 30 16 625 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05425
Feature type CDS
Gene tssI
Product type VI secretion system tip protein TssI/VgrG
Location 1186581 - 1188683 (strand: 1)
Length 2103 (nucleotides) / 700 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_439
Orthogroup size 7
N. genomes 2

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MLSKDPKSTPIDPASVLKDEAINQVKNRVQSKVNETLSTPTQKVAGMASAAASLTQSASASANRVTAHPLIHGGGFTGGQTFAENQALQAAHGALLDALGMDSLESGLVFTCTIGGLPDDTFQVTEFNLTEGLSSLFSLSISAVSALPFIDFQRHLGLASSLTVKRDGVLIRKVNGILAGAVQGNTDGVKTWYHFDIRPEMWVMTLNQDSRIFQHQSVPTILKTLLDEAHVKADCQFYREDLHPERLYTTQKRESAFDFWCRLAFEEGINFWFEEEQLFYSDEHMGMTAGIHLTYNPQADTDISDSTAMTWQYGEYLCVDETIHKDNNFVRPSYPLSHENKIEQGGQHSVFESYGRFQLDDEGRPLTQVRFEQLRNGSKVGQATTNCFALMPGKIFTLSQHPHLPMNDRWQVISVSHHGVQPLADNSGGEGTQLSNSVSFIPGTQEWRPPYRYKPTADGDEVATVVGPPGEEIYVNEYGAVKVHFHWDRRGSADHSASCWVRVAMGWSGNGYGFSAVPRIGTQVLVSYLNGDIDRPIITGCTYDGRNAPPIKFPENKTQTTFRSQTHKGEGFNELRFEDAGGKQEVFLHAQKDMNTRVLHDRTTHVLHDHVEVIENNQQMQVKGARTETIDKDNSETVGQHKKITVGKTLSINVGEVIELRCGASVLRMDNGGHVTINGQEFKFEATGPVKITGKDIDLN

Flanking regions ( +/- flanking 50bp)

TATTTTGTATTGTTCCCTTTTCTTTATCCATTTTTGCATGGAGGCAGATTATGCTTAGCAAAGATCCGAAATCAACGCCCATTGACCCGGCATCCGTTTTAAAAGATGAAGCCATCAATCAAGTGAAAAATAGGGTGCAATCCAAAGTGAACGAAACGCTATCGACACCCACGCAAAAGGTGGCCGGGATGGCCTCAGCAGCGGCCTCGCTCACTCAATCAGCCAGCGCATCGGCCAATCGCGTGACGGCTCATCCCCTGATCCACGGTGGCGGTTTTACCGGTGGACAAACGTTCGCTGAAAACCAAGCACTCCAAGCGGCCCATGGGGCGTTACTTGATGCATTAGGCATGGACAGCCTCGAAAGTGGTTTGGTGTTCACTTGCACCATTGGTGGATTGCCTGACGACACCTTTCAAGTCACCGAATTTAATCTTACCGAAGGATTATCCTCGCTATTTTCACTGTCCATCAGTGCGGTCAGTGCCTTACCCTTTATCGATTTCCAGCGCCATCTTGGCTTAGCCTCATCATTAACGGTCAAACGCGATGGGGTGTTGATCCGCAAAGTCAACGGTATCTTAGCTGGGGCAGTACAAGGCAATACCGACGGAGTGAAAACGTGGTATCACTTCGATATTCGCCCTGAAATGTGGGTGATGACCCTCAATCAAGACAGCCGTATTTTTCAACATCAATCGGTGCCGACCATCTTAAAAACCTTATTGGATGAGGCCCATGTTAAAGCGGATTGCCAATTCTACCGTGAAGATCTACACCCTGAACGTCTCTACACCACCCAAAAACGCGAATCCGCATTTGATTTTTGGTGTCGACTGGCGTTTGAAGAGGGCATTAACTTCTGGTTTGAAGAAGAACAACTGTTTTACAGCGATGAACATATGGGGATGACGGCGGGTATTCACCTCACCTATAACCCGCAGGCCGACACCGATATCAGCGATAGCACTGCCATGACTTGGCAATATGGCGAATATTTGTGTGTGGATGAAACTATCCATAAAGACAACAACTTTGTTCGTCCTTCTTATCCGTTGTCTCATGAAAACAAAATTGAGCAGGGAGGACAGCACAGTGTGTTTGAAAGTTATGGTCGTTTTCAATTAGACGATGAAGGTCGCCCCCTAACACAGGTGCGCTTTGAGCAATTACGTAACGGCAGCAAAGTGGGGCAAGCGACAACAAACTGTTTTGCGCTGATGCCCGGCAAAATCTTCACCTTATCTCAGCATCCCCATCTGCCGATGAATGATCGCTGGCAAGTGATCAGCGTCAGCCATCATGGTGTACAGCCATTGGCGGACAATAGCGGGGGCGAAGGCACACAACTGTCGAATAGTGTCTCCTTTATTCCGGGCACGCAAGAGTGGCGTCCCCCTTATCGTTATAAACCGACGGCCGACGGCGATGAAGTGGCGACGGTGGTGGGACCGCCGGGGGAAGAAATCTACGTCAATGAATATGGCGCCGTGAAAGTGCATTTTCATTGGGATCGTCGGGGAAGTGCCGATCACAGTGCTTCATGCTGGGTGCGGGTTGCCATGGGTTGGAGTGGAAATGGCTATGGTTTTTCTGCGGTACCGCGCATCGGCACACAAGTGTTGGTCAGTTACCTGAATGGGGATATTGACAGACCGATAATTACCGGTTGTACCTATGATGGTCGTAACGCACCACCGATTAAGTTCCCAGAGAATAAGACACAAACTACTTTCCGTAGCCAAACCCACAAAGGGGAAGGTTTTAATGAATTGCGTTTTGAAGATGCGGGCGGTAAGCAAGAGGTGTTTCTTCATGCGCAGAAGGATATGAATACCCGTGTTCTTCATGATCGCACTACCCATGTTTTACACGATCATGTTGAAGTGATCGAAAACAATCAACAGATGCAGGTGAAAGGCGCTCGCACAGAAACGATAGATAAAGATAACAGCGAAACGGTAGGCCAACATAAAAAAATTACTGTAGGCAAAACATTATCTATCAATGTCGGTGAAGTCATTGAATTACGTTGTGGAGCAAGTGTGCTACGAATGGATAATGGTGGGCATGTCACGATTAATGGTCAGGAATTTAAGTTTGAAGCTACAGGTCCTGTGAAAATTACGGGTAAAGATATCGATTTAAACTAAGGGAATAGTGATATGAAAGTGAGTAACACAACCCCATTTCCTTATCTTTT