Homologs in group_3684

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00065 F4V73_RS00065 30.6 Morganella psychrotolerans vgrG type VI secretion system tip protein VgrG
F4V73_RS06965 F4V73_RS06965 23.8 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS16810 F4V73_RS16810 21.8 Morganella psychrotolerans vgrG type VI secretion system Vgr family protein

Distribution of the homologs in the orthogroup group_3684

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3684

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I737 8.06e-120 383 34 15 727 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F3 6.54e-115 370 36 13 653 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I741 5.86e-111 357 34 12 658 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q0PZF7 9.67e-66 236 28 8 514 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
Q0PZH5 8.47e-65 233 27 11 557 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
E0SIS4 1.5e-64 231 31 17 499 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
E0SAL0 1.69e-64 231 30 19 536 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
Q9HYC3 7.41e-63 230 28 15 632 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KN42 1.28e-62 232 27 15 640 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
K7WKL8 2.34e-62 226 26 10 571 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
A0KJB0 1.68e-61 225 27 15 579 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q9HU93 5.04e-58 216 27 15 632 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3K1 1.79e-54 206 28 10 504 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KNE7 6.61e-54 202 28 20 568 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I6M7 3.07e-53 204 28 10 504 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H3AIG7 5.04e-53 204 28 16 547 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9KS45 2.66e-52 202 29 14 500 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
O94854 2.31e-17 91 34 11 180 1 MACF1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Homo sapiens
O94854 4.69e-15 84 33 11 189 1 MACF1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Homo sapiens
O94854 1.81e-12 75 32 6 142 1 MACF1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Homo sapiens
O94854 5.69e-11 70 29 8 182 1 MACF1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Homo sapiens
O94854 8.05e-10 67 28 12 219 1 MACF1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Homo sapiens
O94854 1.65e-08 62 31 8 156 1 MACF1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Homo sapiens
O94854 0.000134 49 26 4 126 1 MACF1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Homo sapiens
Q9QYX7 3.05e-12 74 38 4 152 1 Pclo Protein piccolo Mus musculus
Q9QYX7 1.24e-06 56 37 3 111 1 Pclo Protein piccolo Mus musculus
Q9QYX7 1.78e-05 52 43 2 83 1 Pclo Protein piccolo Mus musculus
G3MZY8 4.04e-08 61 44 8 112 1 POLR2A DNA-directed RNA polymerase II subunit RPB1 Bos taurus
G3MZY8 2.67e-07 58 47 7 108 1 POLR2A DNA-directed RNA polymerase II subunit RPB1 Bos taurus
P11414 4.15e-08 61 44 8 112 1 POLR2A DNA-directed RNA polymerase II subunit RPB1 Cricetulus griseus
P11414 2.67e-07 58 47 7 108 1 POLR2A DNA-directed RNA polymerase II subunit RPB1 Cricetulus griseus
Q69ZZ9 5.1e-08 60 27 8 209 2 Macf1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Mus musculus
Q69ZZ9 3.68e-06 55 30 5 137 2 Macf1 Microtubule-actin cross-linking factor 1, isoforms 6/7 Mus musculus
P08775 1.24e-07 59 43 8 112 1 Polr2a DNA-directed RNA polymerase II subunit RPB1 Mus musculus
P08775 7.84e-07 57 46 7 107 1 Polr2a DNA-directed RNA polymerase II subunit RPB1 Mus musculus
Q9JKS6 2.5e-07 58 33 5 182 1 Pclo Protein piccolo Rattus norvegicus
Q9JKS6 5.24e-06 54 33 4 143 1 Pclo Protein piccolo Rattus norvegicus
O77788 3.31e-07 58 33 0 69 1 NEFM Neurofilament medium polypeptide Bos taurus
O77788 2.19e-06 55 30 0 71 1 NEFM Neurofilament medium polypeptide Bos taurus
O77788 3.78e-06 54 29 0 74 1 NEFM Neurofilament medium polypeptide Bos taurus
O77788 2.99e-05 51 27 0 80 1 NEFM Neurofilament medium polypeptide Bos taurus
O77788 3.4e-05 51 28 1 92 1 NEFM Neurofilament medium polypeptide Bos taurus
P24928 7.58e-07 57 45 8 109 1 POLR2A DNA-directed RNA polymerase II subunit RPB1 Homo sapiens
P24928 5.59e-06 54 42 5 115 1 POLR2A DNA-directed RNA polymerase II subunit RPB1 Homo sapiens
O35930 8.54e-06 53 49 9 141 1 Gp1ba Platelet glycoprotein Ib alpha chain Mus musculus
O35930 0.000143 49 52 5 112 1 Gp1ba Platelet glycoprotein Ib alpha chain Mus musculus
P12255 0.00021 49 26 6 171 1 fhaB Filamentous hemagglutinin Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P12255 0.000271 48 26 6 149 1 fhaB Filamentous hemagglutinin Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P24587 0.00024 48 26 2 145 1 Akap5 A-kinase anchor protein 5 Rattus norvegicus
Q8R4X3 0.000696 47 38 0 57 1 Rbm12 RNA-binding protein 12 Mus musculus
Q2EG98 0.001 47 32 6 143 1 Pkd1l3 Polycystin-1-like protein 3 Mus musculus
Q9JM99 0.001 46 47 9 133 1 Prg4 Proteoglycan 4 Mus musculus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09330
Feature type CDS
Gene tssI
Product type VI secretion system tip protein TssI/VgrG
Location 1958034 - 1960634 (strand: -1)
Length 2601 (nucleotides) / 866 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3684
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MPRTLTLHCSAMPNLLGEPGLAISTFEGEEALSTLYQYKVVAKTPANPNIPWQTAANLDLKKFIGQQMTVTIELDGNGLDTERGAGKGHREISGLVERARFVGRDENQAMYEFIVRPWLNLTTLTSDYKIYQQKSVVDIIDEVLSTYHFPIEKRLSAMYPPLDFQVQYGETDFDFIQRLMEEWGIYWFFEHDDMKNRLVLVDHVGAHKRTISPAYHTLRYESDKPKDGQEYIDQFHAQETITSGQWLTSDYDFKKSRADISALDKKPRKTNYNNFEMYQWPGDYDDPGMGEFLARVRSEEQGCLGARSTGSGEIRSVVCGTTFTMSNFPQSKANREYLVISNQLRATEINQQTDSDGFSIYTSFVVQPTTKVYRPPQTIGKPVTHGPQTALIVGPKGETVWTDEFGRVKVRFLWDRYGDNTDADSCWIRVGQSWAGDNYGGIYIPRVGQEVIVDFLHGDPDRPMIIGSLYNNVTPPPWDLPANRTQSGLISRTIGGGKTNYNGIRFDDKPGLEEYWEQAERNMSRVTKLNETQLIGVNHSQTIGVNSDSTIGVNRSETVGVNKSNMVGANRSEIVGANYSQDVVGLSNRVVGMSDTVVIGGAYLGNFGAAHAVNIAAASSLNVGGAYAINVGGAHSTNVGGYHSITTGGAMQMGVGGAFALTSGGELAIGCVGSMVITADHIKIKAKNGLIIDGACTEINPGENAHARGFGTQPGSPVNIAAPLVPGLPGFFFFAVIPVPTICPPTPPPTETATATSPSMTTPTPSETTPTPSETTPTPSETTPTPSETTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTTPTPTISTPIPTPTIWD

Flanking regions ( +/- flanking 50bp)

TTATGAGCTTAATACAAATTTGATTTGTATCAAACCAATTAGGTGTGAATATGCCTCGAACATTAACCTTGCATTGCTCGGCAATGCCCAACTTACTGGGTGAGCCGGGATTAGCAATATCGACGTTTGAGGGCGAGGAAGCCCTTTCAACGTTGTATCAGTATAAGGTGGTTGCGAAAACGCCCGCAAACCCGAACATTCCGTGGCAGACCGCGGCAAATCTGGATCTGAAGAAATTTATCGGTCAGCAGATGACAGTCACCATCGAACTTGATGGTAACGGGCTGGACACTGAGCGCGGAGCCGGTAAAGGTCATCGTGAGATCTCAGGTCTTGTCGAGCGGGCCCGTTTTGTCGGCCGGGATGAAAATCAGGCAATGTATGAGTTTATCGTACGCCCCTGGCTCAACCTGACCACACTGACGTCTGACTATAAAATTTATCAGCAGAAATCAGTCGTCGATATTATTGATGAAGTGTTATCAACCTATCACTTCCCGATTGAAAAGCGCTTGTCGGCGATGTATCCGCCGCTCGATTTCCAGGTTCAGTATGGTGAAACGGACTTTGATTTCATCCAGCGTCTGATGGAAGAGTGGGGTATTTACTGGTTCTTTGAACATGACGATATGAAAAACCGCCTGGTGCTGGTTGACCACGTCGGTGCTCATAAACGCACCATCAGCCCGGCCTACCATACGCTGCGCTATGAATCAGATAAACCGAAAGATGGTCAGGAATATATTGATCAGTTCCATGCTCAGGAAACAATTACCTCGGGGCAATGGCTGACATCGGATTATGACTTTAAAAAATCCCGTGCAGATATTTCCGCACTGGATAAAAAGCCGCGTAAAACTAACTATAACAACTTTGAAATGTACCAATGGCCGGGTGACTATGATGATCCGGGTATGGGTGAATTCCTGGCGCGTGTGCGCAGTGAAGAACAAGGTTGTCTTGGTGCCCGTTCAACCGGTTCCGGTGAAATCCGCTCTGTGGTCTGTGGTACGACATTTACCATGTCAAATTTCCCGCAGTCGAAAGCAAACCGTGAATATCTGGTTATTTCTAATCAGTTGCGTGCAACAGAAATTAATCAGCAGACGGACAGCGACGGCTTCAGTATCTACACCAGTTTTGTCGTTCAGCCGACAACAAAAGTGTATCGTCCGCCGCAGACAATTGGCAAACCGGTCACTCATGGTCCGCAGACTGCATTGATTGTGGGTCCTAAAGGTGAAACGGTCTGGACAGATGAATTCGGCCGCGTAAAAGTCCGTTTCCTGTGGGATCGCTATGGTGATAACACCGATGCGGACTCCTGCTGGATCCGTGTAGGTCAGTCATGGGCCGGGGATAATTACGGCGGGATTTATATTCCGCGCGTTGGTCAGGAGGTGATTGTTGACTTCCTGCACGGAGATCCTGATCGTCCGATGATCATCGGCAGTCTGTATAACAACGTGACACCGCCACCATGGGATTTGCCGGCAAACCGCACACAAAGTGGTTTGATCAGCCGGACCATCGGCGGGGGCAAAACCAACTATAACGGTATCCGTTTCGACGATAAACCGGGACTCGAAGAGTACTGGGAACAAGCCGAACGTAATATGTCACGCGTGACAAAACTGAATGAAACCCAGCTTATCGGGGTTAACCACAGTCAGACAATCGGCGTGAACTCGGATTCTACCATCGGGGTGAACCGCAGCGAAACGGTGGGCGTTAACAAGAGCAACATGGTCGGTGCAAACCGCAGTGAGATTGTGGGTGCAAACTACAGTCAGGATGTTGTCGGGTTATCAAACCGGGTTGTTGGTATGTCCGACACGGTTGTTATCGGTGGCGCCTATTTAGGTAACTTTGGTGCTGCACACGCCGTTAATATTGCCGCAGCCAGCTCATTGAACGTCGGTGGTGCTTATGCCATCAACGTCGGTGGTGCGCATTCCACTAACGTCGGTGGTTACCACTCGATTACAACGGGTGGTGCGATGCAGATGGGTGTTGGTGGTGCATTTGCACTGACATCCGGTGGTGAGTTAGCCATTGGTTGTGTGGGTTCGATGGTTATCACCGCTGATCATATCAAAATCAAAGCCAAGAACGGCCTGATTATTGATGGTGCCTGTACTGAAATTAACCCGGGAGAGAATGCTCACGCCCGCGGATTTGGTACACAGCCGGGCAGCCCTGTTAACATTGCGGCGCCATTAGTGCCGGGATTACCGGGATTCTTCTTCTTTGCCGTTATTCCTGTACCGACAATTTGTCCGCCGACACCACCACCAACTGAAACAGCAACGGCAACGTCGCCGTCGATGACAACACCGACGCCGTCAGAGACGACACCGACGCCGTCAGAGACGACACCAACGCCGTCAGAGACGACACCAACGCCGTCAGAGACGACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCAACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAACACCGACGCCGACAATATCGACACCGATACCGACACCGACAATCTGGGATTAAAAACCAAGAGGATACGCCGGCAAGTAATTGTCCGGCGTATCCCATGAAGG