PF13437


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13437, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13437
Description HlyD family secretion protein

Occurence in the database

PF13437 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_893 FBDBKF_04665 132669 133742 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S1
1 group_1305 FBDBKF_07990 129927 131234 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S1
2 group_893 EHELCC_05955 192126 193199 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S2
3 group_1305 EHELCC_13820 104121 105428 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S2
4 group_893 NLDBIP_06275 233191 234264 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S4
5 group_1305 NLDBIP_14265 124996 126303 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S4
6 group_893 LHKJJB_03155 210715 211788 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S3
7 group_1305 LHKJJB_08585 33446 34753 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S3
8 group_893 HKOGLL_06630 132579 133652 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S5
9 group_1305 HKOGLL_08135 33446 34753 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S5
10 group_3730 F4V73_RS08970 1864044 1865237 -1 HlyD family efflux transporter periplasmic adaptor subunit Morganella psychrotolerans
11 group_893 F4V73_RS09130 1910350 1911423 1 HlyD family efflux transporter periplasmic adaptor subunit Morganella psychrotolerans
12 group_3730 F4V73_RS09450 1992883 1994106 -1 HlyD family type I secretion periplasmic adaptor subunit Morganella psychrotolerans
13 group_2673 F4V73_RS09475 2001469 2002794 -1 HlyD family secretion protein Morganella psychrotolerans
14 group_1305 F4V73_RS12995 211817 213133 -1 HlyD family type I secretion periplasmic adaptor subunit Morganella psychrotolerans
15 group_893 PMI_RS05900 1293788 1294861 1 biotin/lipoyl-binding protein Proteus mirabilis HI4320
16 group_321 PMI_RS06105 1338416 1339456 1 mdtN multidrug transporter subunit MdtN Proteus mirabilis HI4320
17 group_2188 PMI_RS07730 1688243 1689478 1 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit Proteus mirabilis HI4320
18 group_3730 PMI_RS10005 2170131 2171495 1 HlyD family type I secretion periplasmic adaptor subunit Proteus mirabilis HI4320