PF13412


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13412, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 32 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13412
Description Winged helix-turn-helix DNA-binding

Occurence in the database

PF13412 is associated with 32 different proteins (see tab "Protein list" and "Profile")
The 32 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_602 FBDBKF_01835 53956 54420 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S1
1 group_2557 FBDBKF_02645 227234 227689 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S1
2 group_3242 FBDBKF_04820 170227 171318 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S1
3 group_1219 FBDBKF_07095 85050 85544 1 lrp leucine-responsive transcriptional regulator Lrp Morganella morganii S1
4 group_2119 FBDBKF_15920 34628 35143 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S1
5 group_602 EHELCC_02305 441776 442240 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S2
6 group_2557 EHELCC_03115 615054 615509 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S2
7 group_1219 EHELCC_03875 100642 101136 -1 lrp leucine-responsive transcriptional regulator Lrp Morganella morganii S2
8 group_3242 EHELCC_06110 229684 230775 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S2
9 group_2119 EHELCC_18520 22067 22582 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S2
10 group_2557 NLDBIP_00345 64627 65082 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S4
11 group_602 NLDBIP_01155 237896 238360 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S4
12 group_1219 NLDBIP_03875 100438 100932 -1 lrp leucine-responsive transcriptional regulator Lrp Morganella morganii S4
13 group_3242 NLDBIP_06430 270749 271840 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S4
14 group_2119 NLDBIP_17355 22067 22582 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S4
15 group_602 LHKJJB_00880 154325 154789 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S3
16 group_2557 LHKJJB_01690 327603 328058 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S3
17 group_3242 LHKJJB_03310 248273 249364 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S3
18 group_1219 LHKJJB_09705 100552 101046 -1 lrp leucine-responsive transcriptional regulator Lrp Morganella morganii S3
19 group_2119 LHKJJB_17305 33606 34121 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S3
20 group_602 HKOGLL_00920 159836 160300 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S5
21 group_2557 HKOGLL_01730 333114 333569 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S5
22 group_3242 HKOGLL_06785 170137 171228 -1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S5
23 group_1219 HKOGLL_09270 90006 90500 1 lrp leucine-responsive transcriptional regulator Lrp Morganella morganii S5
24 group_2119 HKOGLL_17090 22067 22582 1 lrp DNA-binding transcriptional regulator, Lrp family Morganella morganii S5
25 group_1219 F4V73_RS01280 272817 273311 1 lrp leucine-responsive transcriptional regulator Lrp Morganella psychrotolerans
26 group_602 F4V73_RS04160 878198 878662 1 Lrp/AsnC family transcriptional regulator Morganella psychrotolerans
27 group_2557 F4V73_RS05145 1098496 1098951 1 Lrp/AsnC family transcriptional regulator Morganella psychrotolerans
28 group_2119 F4V73_RS16390 95416 95892 -1 Lrp/AsnC family transcriptional regulator Morganella psychrotolerans
29 group_2119 PMI_RS00595 152992 153453 1 Lrp/AsnC family transcriptional regulator Proteus mirabilis HI4320
30 group_1219 PMI_RS03425 757996 758490 1 lrp leucine-responsive transcriptional regulator Lrp Proteus mirabilis HI4320
31 group_602 PMI_RS06925 1515512 1515979 -1 Lrp/AsnC family transcriptional regulator Proteus mirabilis HI4320