Homologs in group_2119

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15920 FBDBKF_15920 91.8 Morganella morganii S1 lrp DNA-binding transcriptional regulator, Lrp family
EHELCC_18520 EHELCC_18520 91.8 Morganella morganii S2 lrp DNA-binding transcriptional regulator, Lrp family
NLDBIP_17355 NLDBIP_17355 91.8 Morganella morganii S4 lrp DNA-binding transcriptional regulator, Lrp family
LHKJJB_17305 LHKJJB_17305 91.8 Morganella morganii S3 lrp DNA-binding transcriptional regulator, Lrp family
HKOGLL_17090 HKOGLL_17090 91.8 Morganella morganii S5 lrp DNA-binding transcriptional regulator, Lrp family
PMI_RS00595 PMI_RS00595 83.0 Proteus mirabilis HI4320 - Lrp/AsnC family transcriptional regulator

Distribution of the homologs in the orthogroup group_2119

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2119

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACJ5 9.02e-80 235 72 0 151 1 decR DNA-binding transcriptional activator DecR Escherichia coli (strain K12)
P0ACJ6 9.02e-80 235 72 0 151 3 decR DNA-binding transcriptional activator DecR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACJ7 9.02e-80 235 72 0 151 3 decR DNA-binding transcriptional activator DecR Escherichia coli O157:H7
P0DJA5 3.35e-49 159 46 1 152 3 grp Glutamate uptake regulatory protein Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
F8DT92 4.08e-49 158 46 1 152 4 grp Glutamate uptake regulatory protein Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1)
P0DJA6 3.08e-33 117 36 1 150 4 zrp HTH-type transcriptional regulator Zrp Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
P42179 4.97e-33 117 37 1 154 4 bkdR Bkd operon transcriptional regulator Pseudomonas putida
F8DT24 6.53e-33 117 36 1 150 4 zrp HTH-type transcriptional regulator Zrp Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1)
Q9I1M3 5.66e-27 102 33 0 150 3 bkdR Bkd operon transcriptional regulator Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P44580 3.6e-25 97 36 0 126 4 HI_0224 Uncharacterized HTH-type transcriptional regulator HI_0224 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37424 6.91e-25 97 34 0 150 3 lrp Leucine-responsive regulatory protein Klebsiella pneumoniae
P0A2S0 9.14e-25 96 34 0 150 3 lrp Leucine-responsive regulatory protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37425 9.97e-25 96 34 0 150 3 lrp Leucine-responsive regulatory protein Serratia marcescens
P0ACJ3 1.05e-24 96 34 0 150 3 lrp Leucine-responsive regulatory protein Shigella flexneri
P0ACJ4 1.05e-24 96 34 0 150 3 lrp Leucine-responsive regulatory protein Klebsiella aerogenes
P0ACJ0 1.05e-24 96 34 0 150 1 lrp Leucine-responsive regulatory protein Escherichia coli (strain K12)
P0ACJ1 1.05e-24 96 34 0 150 3 lrp Leucine-responsive regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACJ2 1.05e-24 96 34 0 150 3 lrp Leucine-responsive regulatory protein Escherichia coli O157:H7
O07920 9.12e-24 94 32 0 153 4 azlB Transcriptional regulator AzlB Bacillus subtilis (strain 168)
Q44333 1.87e-23 92 33 0 145 4 putR Proline dehydrogenase transcriptional activator Rhizobium radiobacter
P45265 1.1e-22 91 35 0 148 3 lrp Leucine-responsive regulatory protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O59188 1.18e-20 85 26 2 150 1 fl11 HTH-type transcriptional regulator FL11 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8U0P3 6.76e-19 81 26 2 151 3 fl11 HTH-type transcriptional regulator FL11 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
E1V7V9 1.49e-18 80 33 1 124 3 doeX Transcriptional regulatory protein DoeX Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
P55658 2.42e-18 80 30 0 150 4 NGR_a01550 Uncharacterized HTH-type transcriptional regulator y4tD Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P50337 2.69e-18 79 31 0 116 4 NGR_a01600 Uncharacterized HTH-type transcriptional regulator y4sM Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9V0Y9 4.7e-18 79 26 2 150 3 fl11 HTH-type transcriptional regulator FL11 Pyrococcus abyssi (strain GE5 / Orsay)
Q52710 8.16e-18 78 30 0 143 4 putR Proline dehydrogenase transcriptional activator Rhodobacter capsulatus
P56901 4.97e-16 73 28 0 150 3 lrp Leucine-responsive regulatory protein Rhizobium meliloti (strain 1021)
Q8U067 1.05e-13 67 31 2 143 4 PF1734 Uncharacterized HTH-type transcriptional regulator PF1734 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O59579 6.87e-13 65 33 0 109 4 PH1916 Uncharacterized HTH-type transcriptional regulator PH1916 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9V2D7 9.47e-13 65 29 1 130 4 PYRAB01370 Uncharacterized HTH-type transcriptional regulator PYRAB01370 Pyrococcus abyssi (strain GE5 / Orsay)
O57880 1.26e-12 65 28 1 130 1 PH0140 Uncharacterized HTH-type transcriptional regulator PH0140 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9UY16 1.73e-11 61 31 0 109 4 PYRAB16920 Uncharacterized HTH-type transcriptional regulator PYRAB16920 Pyrococcus abyssi (strain GE5 / Orsay)
P96582 3.52e-11 60 27 1 122 1 lrpC HTH-type transcriptional regulator LrpC Bacillus subtilis (strain 168)
O59309 1.34e-10 59 25 2 143 4 PH1692 Uncharacterized HTH-type transcriptional regulator PH1692 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8U445 1.76e-10 58 30 0 113 4 PF0250 Uncharacterized HTH-type transcriptional regulator PF0250 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P96653 3.66e-10 58 26 1 124 4 lrpB HTH-type transcriptional regulator LrpB Bacillus subtilis (strain 168)
Q9V1E5 6.2e-10 57 24 2 144 4 PYRAB04820 Uncharacterized HTH-type transcriptional regulator PYRAB04820 Pyrococcus abyssi (strain GE5 / Orsay)
B0R4X4 3.13e-09 55 26 1 142 1 lrpA1 HTH-type transcriptional regulator LrpA1 Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
P96652 3.86e-09 55 28 1 124 4 lrpA HTH-type transcriptional regulator LrpA Bacillus subtilis (strain 168)
P42180 7.53e-09 54 25 1 144 1 lrpA HTH-type transcriptional regulator LrpA Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q58133 1.05e-08 54 21 1 143 1 ptr2 HTH-type transcriptional regulator Ptr2 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q8U1H7 1.63e-08 53 25 1 120 4 PF1231 Uncharacterized HTH-type transcriptional regulator PF1231 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O59256 1.92e-08 53 25 1 144 3 lrpA HTH-type transcriptional regulator LrpA Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q57615 2.13e-08 53 25 1 120 1 ptr1 HTH-type transcriptional regulator Ptr1 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9V159 2.39e-08 53 25 1 144 3 lrpA HTH-type transcriptional regulator LrpA Pyrococcus abyssi (strain GE5 / Orsay)
O57818 2.47e-08 53 26 0 123 4 PH0045 Uncharacterized HTH-type transcriptional regulator PH0045 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8U4M7 4.09e-08 52 24 0 123 4 PF0054 Uncharacterized HTH-type transcriptional regulator PF0054 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O31497 7.61e-08 52 28 2 108 4 yezC Uncharacterized HTH-type transcriptional regulator YezC Bacillus subtilis (strain 168)
Q9V2M0 4.26e-07 50 24 0 123 4 PYRAB00550 Uncharacterized HTH-type transcriptional regulator PYRAB00550 Pyrococcus abyssi (strain GE5 / Orsay)
B0R717 2.46e-06 48 26 1 122 4 lrp HTH-type transcriptional regulator Lrp Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
P44337 1.41e-05 45 25 1 108 3 asnC Regulatory protein AsnC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O57802 8.21e-05 43 33 1 75 1 PH0061 Uncharacterized HTH-type transcriptional regulator PH0061 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9V2K6 0.000785 41 27 2 101 4 PYRAB00690 Uncharacterized HTH-type transcriptional regulator PYRAB00690 Pyrococcus abyssi (strain GE5 / Orsay)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16390
Feature type CDS
Gene -
Product Lrp/AsnC family transcriptional regulator
Location 95416 - 95892 (strand: -1)
Length 477 (nucleotides) / 158 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2119
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01037 Lrp/AsnC ligand binding domain
PF13412 Winged helix-turn-helix DNA-binding

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1522 Transcription (K) K DNA-binding transcriptional regulator, Lrp family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05800 Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator - -

Protein Sequence

MIDKIDRKLLQLLQEDASLSLNTLAEAVNLTSTPCWKRLKRLEDDGYIRKRVALLDPEKLGLGLTVIVMIKTQCHSSEWYTEFVEFVQQMPEVVEFYRMAGEFDYMLQVEVVDMKRFDHFYKRLVTGVPGLIDVTSNFAMERIKYTTALPIPEKGAAD

Flanking regions ( +/- flanking 50bp)

TTTTCTTTATCATGCATGATATGGAGAAATATATTCTCCCGGGTGAGCAAATGATAGATAAAATAGACCGTAAGTTACTGCAACTCTTGCAGGAAGATGCCTCGTTATCACTGAATACGCTGGCAGAGGCGGTTAATCTGACCTCTACACCGTGCTGGAAACGTCTGAAAAGGCTGGAAGATGATGGCTATATCCGCAAGCGGGTGGCGCTGCTGGACCCGGAGAAGCTCGGGCTGGGGCTGACCGTGATTGTGATGATAAAAACTCAGTGTCACAGCAGCGAGTGGTATACTGAATTTGTTGAATTTGTTCAGCAAATGCCGGAAGTGGTGGAGTTTTACCGTATGGCCGGGGAGTTTGATTATATGTTGCAGGTCGAAGTGGTGGACATGAAACGCTTTGATCATTTTTATAAAAGGCTGGTTACCGGTGTACCCGGTTTAATTGATGTGACTTCCAATTTTGCGATGGAGCGCATAAAGTACACCACCGCGTTGCCTATCCCTGAGAAAGGTGCCGCGGATTAACGATTAACTTCAGATACTATACCCAACGTCATTCAAGATGCAGCCAATGA