Orthogroup:group_1278


Homologs in group_1278

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07720 FBDBKF_07720 Morganella morganii S1 mscS Small-conductance mechanosensitive channel
EHELCC_13550 EHELCC_13550 Morganella morganii S2 mscS Small-conductance mechanosensitive channel
NLDBIP_13995 NLDBIP_13995 Morganella morganii S4 mscS Small-conductance mechanosensitive channel
LHKJJB_08855 LHKJJB_08855 Morganella morganii S3 mscS Small-conductance mechanosensitive channel
HKOGLL_08405 HKOGLL_08405 Morganella morganii S5 mscS Small-conductance mechanosensitive channel
F4V73_RS13365 F4V73_RS13365 Morganella psychrotolerans - mechanosensitive ion channel
PMI_RS07660 PMI_RS07660 Proteus mirabilis HI4320 - mechanosensitive ion channel

Distribution of group_1278 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1278 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1278

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1278.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mscS 5
2 - 2

Product

# Product Occurence
1 Small-conductance mechanosensitive channel 5
2 mechanosensitive ion channel 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0668 7 M Cell wall/membrane/envelope biogenesis (M) Small-conductance mechanosensitive channel

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K16053 7 miniconductance mechanosensitive channel - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00924 7 Mechanosensitive ion channel, beta-domain

Annotations of the 4 SwissProt hits

Annotation Number of occurrences
Miniconductance mechanosensitive channel YbdG 2
Uncharacterized MscS family protein HP_0415 1
Uncharacterized MscS family protein jhp_0969 1

Protein length

Min length 401
Max length 403
Mean length (sd) 402.4 (1.0)
Median length 403.0

Protein length distribution