PF05930


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05930, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05930
Description Prophage CP4-57 regulatory protein (AlpA)

Occurence in the database

PF05930 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1936 FBDBKF_14525 99492 99713 -1 alpA AlpA family phage regulatory protein Morganella morganii S1
1 group_1936 FBDBKF_16620 8427 8648 -1 alpA AlpA family transcriptional regulator Morganella morganii S1
2 group_413 FBDBKF_17920 23978 24166 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S1
3 group_3555 FBDBKF_18550 31044 31334 1 alpA AlpA family phage regulatory protein Morganella morganii S1
4 group_3555 EHELCC_01835 356507 356797 -1 alpA AlpA family phage regulatory protein Morganella morganii S2
5 group_413 EHELCC_06415 12210 12398 -1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S2
6 group_1936 EHELCC_07755 17272 17493 1 alpA AlpA family phage regulatory protein Morganella morganii S2
7 group_3555 NLDBIP_01625 323339 323629 1 alpA AlpA family phage regulatory protein Morganella morganii S4
8 group_413 NLDBIP_06735 12083 12271 -1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S4
9 group_1936 NLDBIP_08080 17272 17493 1 alpA AlpA family phage regulatory protein Morganella morganii S4
10 group_3555 LHKJJB_00410 69056 69346 -1 alpA AlpA family phage regulatory protein Morganella morganii S3
11 group_1936 LHKJJB_06185 239666 239887 -1 alpA AlpA family phage regulatory protein Morganella morganii S3
12 group_413 LHKJJB_19335 11994 12182 -1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S3
13 group_3555 HKOGLL_00450 74567 74857 -1 alpA AlpA family phage regulatory protein Morganella morganii S5
14 group_413 HKOGLL_04655 257370 257558 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S5
15 group_1936 HKOGLL_04730 1863 2084 1 alpA AlpA family phage regulatory protein Morganella morganii S5
16 group_413 F4V73_RS02460 521154 521372 1 AlpA family transcriptional regulator Morganella psychrotolerans
17 group_413 F4V73_RS10120 134064 134264 -1 AlpA family transcriptional regulator Morganella psychrotolerans
18 group_413 PMI_RS12875 2857629 2857817 1 AlpA family transcriptional regulator Proteus mirabilis HI4320
19 group_1936 PMI_RS17330 3806544 3806774 -1 AlpA family transcriptional regulator Proteus mirabilis HI4320