PF04545

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04545, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04545
Description Sigma-70, region 4

Occurence in the database

PF04545 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_444 FBDBKF_00515 86305 87027 -1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S1
1 group_764 FBDBKF_03515 107558 108412 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S1
2 group_2282 FBDBKF_17530 40418 42268 1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S1
3 group_2349 FBDBKF_18965 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S1
4 group_444 EHELCC_01030 221841 222563 1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S2
5 group_764 EHELCC_07020 138691 139545 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S2
6 group_2282 EHELCC_17425 40418 42268 1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S2
7 group_2349 EHELCC_18710 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S2
8 group_444 NLDBIP_02430 457573 458295 -1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S4
9 group_764 NLDBIP_07345 138564 139418 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S4
10 group_2282 NLDBIP_17770 528 2378 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S4
11 group_2349 NLDBIP_18595 13425 14417 1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S4
12 group_444 LHKJJB_03945 64814 65536 -1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S3
13 group_764 LHKJJB_06880 102310 103164 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S3
14 group_2282 LHKJJB_17690 526 2376 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S3
15 group_2349 LHKJJB_18580 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S3
16 group_444 HKOGLL_03100 222046 222768 1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S5
17 group_764 HKOGLL_04050 130223 131077 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S5
18 group_2282 HKOGLL_17700 526 2376 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S5
19 group_2349 HKOGLL_18315 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S5
20 group_444 F4V73_RS06525 1362145 1362867 -1 RNA polymerase sigma factor FliA Morganella psychrotolerans
21 group_764 F4V73_RS11385 419291 420145 1 rpoH RNA polymerase sigma factor RpoH Morganella psychrotolerans
22 group_2349 F4V73_RS13875 412519 413520 -1 rpoS RNA polymerase sigma factor RpoS Morganella psychrotolerans
23 group_2282 F4V73_RS16710 164268 166163 1 rpoD RNA polymerase sigma factor RpoD Morganella psychrotolerans
24 group_444 PMI_RS07905 1732441 1733163 -1 RNA polymerase sigma factor FliA Proteus mirabilis HI4320
25 group_2349 PMI_RS11015 2425405 2426394 -1 rpoS RNA polymerase sigma factor RpoS Proteus mirabilis HI4320
26 group_2282 PMI_RS11730 2591863 2593719 1 rpoD RNA polymerase sigma factor RpoD Proteus mirabilis HI4320
27 group_764 PMI_RS17955 3946115 3946969 1 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis HI4320