Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02784, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 15 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF02784 |
---|---|
Description | Pyridoxal-dependent decarboxylase, pyridoxal binding domain |
Occurence in the database
PF02784 is associated with 15 different proteins (see tab "Protein list" and "Profile") |
The 15 proteins are classified into 3 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_879 | FBDBKF_04520 | 99384 | 101288 | -1 | speA | biosynthetic arginine decarboxylase | Morganella morganii S1 |
1 | group_2010 | FBDBKF_15095 | 27512 | 28762 | 1 | lysA | diaminopimelate decarboxylase | Morganella morganii S1 |
2 | group_879 | EHELCC_05810 | 158841 | 160745 | -1 | speA | biosynthetic arginine decarboxylase | Morganella morganii S2 |
3 | group_2010 | EHELCC_11150 | 56144 | 57394 | -1 | lysA | diaminopimelate decarboxylase | Morganella morganii S2 |
4 | group_879 | NLDBIP_06130 | 199906 | 201810 | -1 | speA | biosynthetic arginine decarboxylase | Morganella morganii S4 |
5 | group_2010 | NLDBIP_11495 | 56144 | 57394 | -1 | lysA | diaminopimelate decarboxylase | Morganella morganii S4 |
6 | group_879 | LHKJJB_03010 | 177430 | 179334 | -1 | speA | biosynthetic arginine decarboxylase | Morganella morganii S3 |
7 | group_2010 | LHKJJB_11355 | 56144 | 57394 | -1 | lysA | diaminopimelate decarboxylase | Morganella morganii S3 |
8 | group_879 | HKOGLL_06485 | 99294 | 101198 | -1 | speA | biosynthetic arginine decarboxylase | Morganella morganii S5 |
9 | group_2010 | HKOGLL_09965 | 56144 | 57394 | -1 | lysA | diaminopimelate decarboxylase | Morganella morganii S5 |
10 | group_879 | F4V73_RS08960 | 1860163 | 1862067 | -1 | speA | biosynthetic arginine decarboxylase | Morganella psychrotolerans |
11 | group_2010 | F4V73_RS12355 | 56686 | 57936 | -1 | lysA | diaminopimelate decarboxylase | Morganella psychrotolerans |
12 | group_4298 | PMI_RS01135 | 279605 | 281008 | 1 | Y4yA family PLP-dependent enzyme | Proteus mirabilis HI4320 | |
13 | group_2010 | PMI_RS01660 | 395217 | 396461 | 1 | lysA | diaminopimelate decarboxylase | Proteus mirabilis HI4320 |
14 | group_879 | PMI_RS10315 | 2261381 | 2263288 | -1 | speA | biosynthetic arginine decarboxylase | Proteus mirabilis HI4320 |