PF02784


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02784, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02784
Description Pyridoxal-dependent decarboxylase, pyridoxal binding domain

Occurence in the database

PF02784 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_879 FBDBKF_04520 99384 101288 -1 speA biosynthetic arginine decarboxylase Morganella morganii S1
1 group_2010 FBDBKF_15095 27512 28762 1 lysA diaminopimelate decarboxylase Morganella morganii S1
2 group_879 EHELCC_05810 158841 160745 -1 speA biosynthetic arginine decarboxylase Morganella morganii S2
3 group_2010 EHELCC_11150 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S2
4 group_879 NLDBIP_06130 199906 201810 -1 speA biosynthetic arginine decarboxylase Morganella morganii S4
5 group_2010 NLDBIP_11495 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S4
6 group_879 LHKJJB_03010 177430 179334 -1 speA biosynthetic arginine decarboxylase Morganella morganii S3
7 group_2010 LHKJJB_11355 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S3
8 group_879 HKOGLL_06485 99294 101198 -1 speA biosynthetic arginine decarboxylase Morganella morganii S5
9 group_2010 HKOGLL_09965 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S5
10 group_879 F4V73_RS08960 1860163 1862067 -1 speA biosynthetic arginine decarboxylase Morganella psychrotolerans
11 group_2010 F4V73_RS12355 56686 57936 -1 lysA diaminopimelate decarboxylase Morganella psychrotolerans
12 group_4298 PMI_RS01135 279605 281008 1 Y4yA family PLP-dependent enzyme Proteus mirabilis HI4320
13 group_2010 PMI_RS01660 395217 396461 1 lysA diaminopimelate decarboxylase Proteus mirabilis HI4320
14 group_879 PMI_RS10315 2261381 2263288 -1 speA biosynthetic arginine decarboxylase Proteus mirabilis HI4320