Homologs in group_2010

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15095 FBDBKF_15095 91.1 Morganella morganii S1 lysA diaminopimelate decarboxylase
EHELCC_11150 EHELCC_11150 91.1 Morganella morganii S2 lysA diaminopimelate decarboxylase
NLDBIP_11495 NLDBIP_11495 91.1 Morganella morganii S4 lysA diaminopimelate decarboxylase
LHKJJB_11355 LHKJJB_11355 91.1 Morganella morganii S3 lysA diaminopimelate decarboxylase
HKOGLL_09965 HKOGLL_09965 91.1 Morganella morganii S5 lysA diaminopimelate decarboxylase
PMI_RS01660 PMI_RS01660 70.6 Proteus mirabilis HI4320 lysA diaminopimelate decarboxylase

Distribution of the homologs in the orthogroup group_2010

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2010

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0IWI3 0.0 565 68 2 405 1 lysA Diaminopimelate decarboxylase Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)
P00861 0.0 565 68 2 405 1 lysA Diaminopimelate decarboxylase Escherichia coli (strain K12)
Q89AC6 4.29e-180 511 59 4 408 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9ZBH5 3.49e-179 509 63 1 402 3 lysA Diaminopimelate decarboxylase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P57513 2.2e-175 499 58 3 400 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9C4 5.12e-173 493 57 3 402 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O27390 1.02e-70 232 37 12 408 3 lysA Diaminopimelate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q9Z661 1.28e-60 205 34 16 416 3 lysA Diaminopimelate decarboxylase Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q9PII5 9.06e-59 200 33 12 414 3 lysA Diaminopimelate decarboxylase Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q9ZME5 2.7e-58 199 34 11 411 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain J99 / ATCC 700824)
O67262 2.78e-56 194 32 10 405 1 lysA Diaminopimelate decarboxylase Aquifex aeolicus (strain VF5)
B4XMC6 1.25e-55 192 34 12 411 1 lysA Diaminopimelate decarboxylase Helicobacter pylori
P56129 8.74e-55 189 34 12 411 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain ATCC 700392 / 26695)
O05321 1.77e-53 186 33 14 420 3 lysA Diaminopimelate decarboxylase Pseudomonas fluorescens
Q9JWA6 3.69e-52 182 33 16 417 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q9JXM2 2.05e-51 181 33 16 417 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9KVL7 1.4e-50 179 34 16 422 1 lysA Diaminopimelate decarboxylase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9X1K5 2.45e-48 172 33 15 402 1 lysA Diaminopimelate decarboxylase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q6ZG77 6.56e-48 173 33 13 406 2 LYSA Probable diaminopimelate decarboxylase, chloroplastic Oryza sativa subsp. japonica
Q9RTK2 1.41e-47 170 33 10 402 3 lysA Diaminopimelate decarboxylase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q58497 1.7e-47 171 33 16 425 1 lysA Diaminopimelate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P44316 1.51e-46 168 32 14 419 3 lysA Diaminopimelate decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O29458 3.85e-46 167 30 11 409 3 lysA Diaminopimelate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q2A5D5 8.74e-46 165 30 11 382 3 lysA Diaminopimelate decarboxylase Francisella tularensis subsp. holarctica (strain LVS)
P19572 1.03e-45 166 32 17 421 3 lysA Diaminopimelate decarboxylase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P23630 7.64e-45 164 31 14 427 3 lysA Diaminopimelate decarboxylase Bacillus subtilis (strain 168)
Q9HK20 1.68e-43 159 30 12 413 3 lysA Diaminopimelate decarboxylase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q8A800 7.85e-43 157 31 17 399 3 lysA Diaminopimelate decarboxylase Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
Q949X7 1.33e-41 156 31 12 405 1 LYSA1 Diaminopimelate decarboxylase 1, chloroplastic Arabidopsis thaliana
Q9KCM5 2.79e-41 154 29 11 418 3 lysA Diaminopimelate decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q5HG20 1.28e-40 152 31 17 416 3 lysA Diaminopimelate decarboxylase Staphylococcus aureus (strain COL)
Q94A94 2.7e-40 152 30 11 401 1 LYSA2 Diaminopimelate decarboxylase 2, chloroplastic Arabidopsis thaliana
P41023 4.9e-40 151 30 17 420 3 lysA Diaminopimelate decarboxylase Bacillus methanolicus
O69203 8.8e-38 145 32 16 418 3 lysA Diaminopimelate decarboxylase Actinosynnema pretiosum subsp. auranticum
P31851 2.34e-34 135 30 13 407 3 tabA Protein TabA Pseudomonas amygdali pv. tabaci
Q50140 4.8e-30 124 27 13 430 3 lysA Diaminopimelate decarboxylase Mycobacterium leprae (strain TN)
Q8RQM6 5.22e-29 121 28 14 425 3 lysA Diaminopimelate decarboxylase Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
P9WIU7 3.23e-28 119 28 14 430 1 lysA Diaminopimelate decarboxylase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIU6 3.23e-28 119 28 14 430 3 lysA Diaminopimelate decarboxylase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A5M5 3.23e-28 119 28 14 430 3 lysA Diaminopimelate decarboxylase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P09890 4.54e-28 118 30 17 424 1 lysA Diaminopimelate decarboxylase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q55484 7e-28 118 27 15 428 3 lysA Diaminopimelate decarboxylase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q2L4H3 1.02e-27 117 26 15 423 1 btrK L-glutamyl-[BtrI acyl-carrier protein] decarboxylase Niallia circulans
Q9X5M1 9.18e-25 109 27 13 425 3 lysA Diaminopimelate decarboxylase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q8ZNC4 2.64e-20 96 26 21 443 1 dokD D-ornithine/D-lysine decarboxylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q54UF3 2.89e-20 95 24 9 349 3 odc Probable ornithine decarboxylase Dictyostelium discoideum
A0A1S4AUX8 3.43e-15 80 26 15 360 2 ODC1A Ornithine decarboxylase 1A, chloroplastic Nicotiana tabacum
Q9UQW9 1.75e-14 78 27 15 351 2 spe1 Ornithine decarboxylase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P93351 3.29e-14 77 26 15 356 2 ODC1B Ornithine decarboxylase 1B, chloroplastic Nicotiana tabacum
P50134 3.32e-14 77 25 16 360 2 None Ornithine decarboxylase Datura stramonium
Q9FPK5 4.66e-14 77 26 15 360 1 ODC Ornithine decarboxylase, chloroplastic Nicotiana glutinosa
E0WN94 5.27e-14 77 25 15 358 2 ODC Ornithine decarboxylase, chloroplastic Nicotiana glauca
O22616 3.08e-13 74 25 17 366 2 ODC Ornithine decarboxylase Solanum lycopersicum
B8NHE2 1.05e-12 72 21 11 392 1 flvG Decarboxylase flvG Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167)
Q2G1M6 5.72e-12 70 24 16 368 1 sbnH 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase Staphylococcus aureus (strain NCTC 8325 / PS 47)
P07805 7.47e-12 70 25 16 395 1 None Ornithine decarboxylase Trypanosoma brucei brucei
Q8S3N2 5.49e-11 67 24 16 367 2 ODC Ornithine decarboxylase Capsicum annuum
P08432 8.12e-11 67 23 12 376 1 SPE1 Ornithine decarboxylase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O50657 1.52e-09 63 23 11 356 1 ldc Lysine/ornithine decarboxylase Selenomonas ruminantium
Q9I8S4 6.6e-09 61 21 10 355 2 azin2 Antizyme inhibitor 2 Xenopus laevis
P41931 2.53e-08 59 23 19 405 1 odc-1 Ornithine decarboxylase Caenorhabditis elegans
P27120 4.2e-08 58 21 14 381 2 odc1-a Ornithine decarboxylase 1 Xenopus laevis
P27116 1.01e-07 57 24 11 278 1 None Ornithine decarboxylase Leishmania donovani
O35484 1.54e-07 57 22 15 367 1 Azin1 Antizyme inhibitor 1 Mus musculus
P49725 5.12e-07 55 24 13 359 2 ODC Ornithine decarboxylase Panagrellus redivivus
P27117 1.46e-05 50 21 15 388 2 ODC1 Ornithine decarboxylase Bos taurus
P27119 2.16e-05 50 20 15 392 2 Odc1 Ornithine decarboxylase Mus pahari
P40808 2.49e-05 49 21 13 364 3 Odc2 Ornithine decarboxylase 2 Drosophila melanogaster
P11926 8.44e-05 48 22 17 391 1 ODC1 Ornithine decarboxylase Homo sapiens
P09057 0.000217 47 21 15 372 1 Odc1 Ornithine decarboxylase Rattus norvegicus
Q96A70 0.000709 45 21 11 348 1 AZIN2 Antizyme inhibitor 2 Homo sapiens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12355
Feature type CDS
Gene lysA
Product diaminopimelate decarboxylase
Location 56686 - 57936 (strand: -1)
Length 1251 (nucleotides) / 416 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2010
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0019 Amino acid transport and metabolism (E) E Diaminopimelate decarboxylase

Kegg Ortholog Annotation(s)

Protein Sequence

MTIATKSLQAPFTPDTLRSLAQQYGTPLWLYDSEVIINRIARLTRFDVIRFAQKANSNIHILRLMREQGVKVDSVSAGEIERALKAGYTPDEIVFTADMITAETLDRVLALGIAVNTGSVDMLRQIGARSPGHPVWLRINPGFGHGHSQKTNTGGENSKHGIWFADLGEALAEISRYQLTLVGIHMHIGSGVDYEHLATVCDAMAELVITHNLDIRAISAGGGLSTPYRDGDEVIDINNYFSLWDAARSRIARHLGRDITLEIEPGRYLVAESGILLAQVRAVKGMGSRHYVLVDSGFNDLMRPAMYGSYHHISVLPAEGELRTQPLTETIVAGPLCESGDVFTQLEGGMVVPRALPPVQVDDFLVFHDTGAYGASMSSNYNSRPLLPEVLFTDGKPVLIRRRQTIDELMALELTE

Flanking regions ( +/- flanking 50bp)

TTTTTGTCACGATGGAAAAAAATGAGATCCCTGTCAAAGAGCACAACACCATGACAATCGCAACCAAATCACTACAGGCACCTTTTACCCCGGATACGCTGCGCAGCCTCGCGCAACAGTACGGCACACCGCTGTGGCTTTATGACAGTGAGGTAATTATTAACCGTATTGCGCGGCTGACCCGTTTTGATGTCATCCGGTTTGCGCAGAAGGCAAATTCAAATATTCATATTCTGCGTCTGATGCGTGAACAGGGTGTAAAAGTGGACTCAGTCTCTGCCGGGGAAATAGAACGCGCCCTGAAGGCCGGGTACACGCCGGATGAAATTGTATTCACCGCCGATATGATTACAGCAGAAACGCTTGATCGCGTGCTGGCGCTGGGAATTGCTGTGAATACCGGCTCGGTGGATATGCTTCGCCAGATTGGCGCACGCAGTCCCGGGCATCCGGTCTGGTTACGCATCAATCCGGGTTTTGGTCATGGACACAGTCAGAAAACCAATACCGGCGGGGAAAACAGTAAGCACGGGATCTGGTTTGCCGATCTCGGGGAAGCGCTGGCAGAAATCAGCCGTTATCAGCTGACGCTGGTGGGTATTCACATGCATATCGGCTCCGGGGTGGATTATGAACATCTGGCAACTGTGTGTGACGCGATGGCTGAATTAGTTATTACTCATAACCTGGATATCCGGGCGATTTCTGCGGGCGGTGGGTTATCAACACCTTACCGTGACGGAGATGAAGTTATTGATATCAATAATTATTTCTCATTATGGGATGCCGCCCGTTCGCGTATTGCCCGCCATCTTGGCCGTGATATTACGCTGGAAATTGAACCCGGGCGCTATCTGGTGGCAGAATCCGGCATTTTGCTTGCACAGGTGCGGGCGGTTAAAGGGATGGGAAGCCGCCACTATGTGCTGGTGGACAGCGGATTTAATGACCTGATGCGTCCTGCGATGTACGGCAGTTATCACCATATTTCTGTACTGCCTGCGGAAGGTGAATTACGGACACAGCCACTGACAGAAACCATTGTTGCCGGTCCGCTGTGTGAATCAGGCGATGTATTTACTCAGCTTGAGGGCGGGATGGTGGTTCCCAGAGCACTGCCACCGGTGCAGGTGGATGATTTTCTGGTATTCCATGATACCGGCGCTTACGGCGCCTCTATGTCTTCAAATTACAACAGCCGTCCGTTATTACCGGAAGTCTTGTTTACTGACGGAAAACCTGTGCTGATCCGCCGTCGCCAGACGATTGATGAATTGATGGCACTGGAACTGACCGAATAATTATTATCTTATTATATACCCAACGTCATTCAAGATACAGGAAGGCGGCA